Array 1 218770-216872 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTL01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss28 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218769 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 218708 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 218647 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 218586 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 218524 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 218463 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 218402 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 218341 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 218280 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 218219 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 218158 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 218097 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 218036 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 217975 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 217914 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 217853 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 217792 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 217731 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 217670 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 217609 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 217551 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 217490 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 217429 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 217368 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 217307 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 217246 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 217185 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 217124 29 100.0 11 ............................. CGGCCAGCCAT Deletion [217085] 217084 29 72.4 32 T.AAA.AG...TG................ ACAGGGTATATGAGCTTATACGTCATGAACCA 217023 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 216962 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 216901 29 93.1 0 A...........T................ | A [216874] ========== ====== ====== ====== ============================= ================================= ================== 32 29 97.7 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236668-235052 **** Predicted by CRISPRDetect 2.4 *** >NZ_SDTL01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain inss28 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 236667 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 236605 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 236544 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 236483 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 236422 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 236361 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 236300 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 236239 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 236178 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 236117 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 236056 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 235995 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 235934 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 235873 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 235812 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 235751 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 235690 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 235629 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 235567 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 235506 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 235445 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 235384 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 235323 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 235262 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 235201 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 235140 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 235079 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //