Array 1 84236-85710 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPHP01000001.1 Escherichia coli strain E4219 NODE_1_length_248158_cov_44.3729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84236 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84297 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 84358 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84419 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84480 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84541 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84602 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84663 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84724 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84785 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84846 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84907 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84931] Deletion [84948] 84949 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 85010 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85071 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 85132 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85193 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85254 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85315 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 85376 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 85437 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85498 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85560 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85621 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85682 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111260-112508 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPHP01000001.1 Escherichia coli strain E4219 NODE_1_length_248158_cov_44.3729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111260 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111321 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111382 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111443 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 111504 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 111565 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 111626 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 111687 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 111748 29 96.6 32 ............G................ ATTTCATCAAAGCATTAAGGGATGGAATAAAG 111809 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 111870 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 111931 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 111992 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 112053 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 112114 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 112175 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 112236 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 112297 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 112358 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 112419 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 112480 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //