Array 1 322991-323258 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWW01000006.1 Amycolatopsis arida strain CGMCC 4.5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 322991 28 100.0 34 ............................ AGTGCGTGTTTGACGCGGAGACGCATGGACGGAT 323053 28 100.0 33 ............................ CTCCATCTCGCCGCGAGCGCAGTACTTGGTCTC 323114 28 92.9 31 .....................AC..... CACTACAACGCGATGAGCACGTCGGGAGCCG 323173 28 75.0 30 .........C.G..G.T.......CCG. CTCGGGCACGAGCGTGGCCTCGTCGACGTA 323231 28 75.0 0 ...........G....T.....ATCCG. | ========== ====== ====== ====== ============================ ================================== ================== 5 28 88.6 32 GTCTTCCCCGCACACGCGGGGGTGGTCC # Left flank : TCGCCTTCGGGCATCACCCGCTTCCGCTGGGGCGGTGCCAGGCGCGCCCACAGCCAGCCGAGCGGCATGCCGACCAGGCTGACCATGGAGAGCACGATGATCGCCGGGAGCAGGTCCGCCTTGACGACGACCCGCGGGCGCTCGCGCGGCACCCCGGGCAACGCCCGGCCCGGCTCGGCGGCGACCCGGCGGGACCGGACCGGCGACCCCGTCACAGCGACCTCCCTGCACGCGAACTCCCCGTCCCGCGAGCCTAACCGCTGCTCGATGGCCGCCCCACACCCCCACACACGGCCACTCACCCAAGCGAGTGGCGGTTGACCGGCCCGACGGGCTGGCGAGGTAGCGCCCGGTTGACCGGCATTCCGCCAGGGAACTGGAACCAACGCCGAAGGGCGGCTGCCGAACCGGCCGACGCCGGCGCCGCGACGCGTTAGACTCTGCGGCACAAAGTAAATGAAATTCGCCCCAGAGCCGCCCAAACCCGCAGGTCAAGGAGT # Right flank : CACGAGGTCTCAGCCGGGGGCGGTGGTTTCGCCGTGGCGGCTGCAGCGGGCTGACCAGCCGGACGGGGTGATCTGGACCACCATGCGGCGGGCGCAGTGGTGGCAGAACCGCGGCGGCTCCAGGGCCGTGCGGGGGTTGCGGCACGCCACGTGCTCGGGTGCCTCCTCCGCGGCGACCGGCTGCCCGCACCGCACGCAGAACCCGGAACCGGTCACAACGTCTCGCTCAGCGCCTTGATCGGCATCTTCAGGTCGGCCAGCATCGCCAGGTCCTGCTCGGCCGGCCGGCCCAGGTTGGTCAGGTAGTTGCCCACGATGATCGCGTTGATCCCGCCCAGCATGCCCTGCTCCGCGCCGAGGTCACCGAGCGTCAGCTCGCGCCCGCCGGCGAACCGCAGCATCGTCCGGGGCAGCGCCAGCCGGAACGCCGCCACGATCCGCAGCGCCTCCTTGCCCTCGATCACCGGGTAGTCCTCGTACGGCGTCCCCTGCTGCGGGAT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.43, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACACGCGGGGGTGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 246030-246425 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWW01000002.1 Amycolatopsis arida strain CGMCC 4.5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246030 29 100.0 32 ............................. CCGCCGAGCACGTACAACACGGTGGTGTTCAT 246091 29 100.0 32 ............................. GTAGGTGTCCAGGCCCCGGTACGACGACTGGG 246152 29 96.6 32 ............................G GACTGCTTCGTCCGCGCAGCGCTCGATACGAA 246213 29 100.0 32 ............................. CCGACGCCGAGCTTGCGGGTCTGCTGCCCGAA 246274 29 96.6 32 ............................G GCGGGGCGCGTCACCGACCAGCAGCGACGCCG 246335 29 89.7 33 .........A...G.........A..... GTCACCAAGCGCGCCGGTGCGGGCTCGCGGTAA 246397 29 89.7 0 .............G.............GT | ========== ====== ====== ====== ============================= ================================= ================== 7 29 96.1 32 GTCTTCCCCGCACCCGCGGGGGTGGTCCC # Left flank : ACCCCGAGCAGCGCGGGCGCCGGGTAGCCGGCGAACGTGGTGAGCACCATCCCGGGACCGGTCGGCTTGCCGCGGGACACGGTGACGCCGGAGGTGTCCGAGTGCAGCCGGATGCCGCGCAGCCGCCGGCCGCTGAGCACGGCGAGCAGGGCGTGCCCCGCCTCGTGCACGATGGTGATCACGTGCCGGGCGAGCCGCCACGGCCGGCGGGCCAGCACCAGGGCGAGCGCCGCCACCCCGGCGACGAGCGCCACCGCCGGCGGCGGTGGCGCCTGGGTGTCGAACAGCCGCCAGATTCCGATCGCGTCGGTCAGCTCCACCTGATCAGCTCATCACGACCCCCTTTCGTTCGAAGTAGGCACCCCCGCGGGGCGACGATGCCTGGCGCCCCGGACACCGACGGCCGATCCGTCGCCGCCGGCACGCCGACCCGCTAGACTCTGCGCCACAAAGTAAATGAAAACCGGCCTCGGGGCGCGGAAACCCGCAGGTCACGAAGT # Right flank : TGCTGGTCGGGCGGCACGGGCAACCGCGTCATGGTGCGTCCCGGCGCGGCCGCACCGCCGGCTGGTCACGTCAGCCTCCCCCGCGGGCGGTCGGGCCCACCGGCTCGGGGGTGTCGTCGGCGAGGCGCACCAGGTGCGCCGCCCAGCCGCGGTACGGGCGCCACCGCTCGGCGAGGCGCTCCAGCGCGGGCACGTCCGCAGGGCCCACGCCGTACCGGCGCGCCATCGCCACGCGCAACCGCCAGTCGTCGCGCGGGAAGACGTCCGGGTGGCCCGCGCCCCGGCCCAGCACCAGCTGCGCCGAGTGCGGCCCCACCCCGGGCAGCTGCCGCAGCCGCCACAGCGCCTCCTCGGCCTCCATCCCGCGCAGCCGCTCCGCGTCCAGCTCGCCGGACCGGGCCGCCAGCGCGATCGCCCGCAGCCACTCGACCTTCCGCTCCGGCAGCCCGGCCACCCCGTCGACCTCGGCGAGGACCCCGGGCGCGGGGAAGGCGCACAGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCACCCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCACCCGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 854764-855099 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWW01000002.1 Amycolatopsis arida strain CGMCC 4.5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 854764 30 93.3 31 ............................AT TGCGGTAATGGACATCGGGGGTCCACGACTT 854825 30 96.7 31 .............................T TCGGGAAGTGGATGGTGTCGCCGGGCTTGCC 854886 30 96.7 31 ............................G. TGCGCGCGTTGGTGATCTGGCCGTGCAGCTG 854947 30 100.0 31 .............................. TGGCGGAGGCTTCGTCGATCTCGTCGATCAG 855008 30 100.0 31 .............................. CAGACGCTAGGTCCGCCTCCGGGACGTTGAA 855069 30 83.3 0 G............G...........GGG.. | C [855093] ========== ====== ====== ====== ============================== =============================== ================== 6 30 95.0 31 CTCTTCCCCGCACACGCGGGGGTGGTCCCG # Left flank : TGGGCCTGCGCGAGACGCGTCTGGTGCACCGGGTCCCCGCCCACCCGCTCGCGTCGGTGCTCGACGGCCGCACCGTGGTCATCACCACCTGCGGCGTCCTGGGCTGGCTGCTCCGCGACGAGCCACCCACCACCTGGCCCCGCTGCACCTCATGCCATGACACGCGGCGAACCCCTCCTGCCCCCGAGTAGCAAGCGACACGACCGGACGACACCGCGAACCGGACCGCGGCCCGAACGACGAAGGCCCGAAGAACACCTGGGCCGAAGGCACTCAGCGAGACGAGCGGACCAGAGCACCGGCCAAGGCGACCGGCCCGGAGGACACGTCCCCTGATCACCAACCCCGAACGCGTTGGCCCCCGAGTGGCGCACCGCTCCCACGACGTCCACTGACCGCGGTAGTGTCGCCCTCGCCGCAGAGTTCCCGACCCGCTGGCTTTCCAGGACAAAGTAAAGGAAAATCGACCAGAAGCCGCACAAAACCCCTGGTCAACAAGT # Right flank : GATCATGTCCCGTTGTGCCGACCGTGTCGCGTGCTGCGGAATTCCGGGGACAGGGGCGGCCCGCACTCGCTATGCTCGGCGCCGCTCATGGAGTAGATCAGCGGTAGATCACCCGGCTGTTCACCGGGAGGGCGCGGGTTCGACTCCCGCCTCCATGTCGACGGGACCAACCCGCACTACCTGGCGTAGCTCAGTGGCAGAGCACCCGGCTTCGGACCGGGAGGGCGCGAGTTCGACCCTCGCCGCCAGGTCCGCCCCGACCCGGAGTCCGCCGTGCCCCACCACTACGCCCTCGGTCAGCTCCACCGGGCCATGGCCAGGCTCGCCGATCTCGACGACCCGGCGGCCCGCGACCGGGCGGCCGCCAAGGTGCGCCGCTGGCGGGACGTGCTGGAGGGGATGGCCAGCGGCCGCGTCGAGGTCGGCTCGCGCACCCCGGTCGCGGACACCCCGGCCTGGGTCACCCTCGAGGTCGCGCACGGCGGTTTCGCCACCGGCCG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCCCCGCACACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 857818-858677 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWW01000002.1 Amycolatopsis arida strain CGMCC 4.5579, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================================================== ================== 857818 30 93.3 32 ............................AC TGACGGGCCGAGCTGACCAACAGTGTCACCAC 857880 30 100.0 67 .............................. GNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCAC 857977 30 100.0 31 .............................. GCTGCAAGCCTTTGAATTTGTTCAACGCGGT 858038 30 96.7 32 .............................C CGGTCATCGCGGACGTGGTGCAGACCCAGTCC 858100 30 93.3 31 ............................TG ATCCGCCGCGGCTCCGGCGGCCGGCGGGAAG 858161 29 90.0 31 .....................-......GC CCTAGAAGACTTGGCAGACCCGGACTGGACG 858221 30 96.7 31 .............................A GCCGGGGCACGTTATGGAGATGGTGGTACTC 858282 30 93.3 32 ..............G.............G. GGCTCGGTGACAAGCGGATCGAGTTCTGGTCA 858344 30 90.0 31 ..............G.............GA TCATGAGCGGGTGGGCGTGTCGCTGGACACG 858405 30 90.0 31 .....T........G..............C GCCCTGCCTATCCGGGACTGTTCTCCCCAAC 858466 30 96.7 31 .............................G GATGCGCCGACCAGTCCCTATTCCAGTCGAC 858527 30 93.3 31 .....................A......T. GCGCGCGCTGGCTCGCGTTCAGCCCGAGGTA 858588 29 90.0 31 .................-.........T.G GGGAGTTGATCGGCAACTCTCGTTCGGAGTC 858648 30 80.0 0 C..........A.G..T........C...A | ========== ====== ====== ====== ============================== =================================================================== ================== 14 30 93.1 34 GTCTTCCCCGCGCACGCGGGGGTGGTCCCT # Left flank : GGACCACGCGCCGGACCTGGCCACGCGCACCTTCGCCTGGCTGGTGCGCCGGCTCGGCCAGCCCGCCGAAGGGCACGCCGCGCTGATCCAGGTGAAGAACGCCGCGTACGCCTGGCGGCAGGCGCTCTTCTACCTCAGCTTCTGCACCCCAGAGGAGCAGGCGGCTCAGGCGGACCAGCTGGCCGACCAGGTCCGCCGCGCCGGCCTGGCCGCCCGGTTCGGCCCGGCCGTGGACGGGCTGCTCGGCGTGCTCGCCGGCCACCGCTTCACCGCGACCGGCACCCTTCCGGGCTCCCCCGGCCGCCGGTTCCTCGGCTGGGCCGGGGAGCGGCACTGGTACCTGGCCGAGCCCGGGGCACGTTGATCGACCACGCCCGGTGCTCGGCCAGCCAGACCAGCGGTCCCGGGCACCCGCTCGATCGTTCCCCGACACGCTGGCTTTCCACGACAAAGTAAAGGAAAATCGACCAGACGCCCCGAAAAGCCCCAGGTCAAGAAGT # Right flank : ATCACCGAGTACCGGCGGTTGCGCGCTCGGATCGTCGCCGCCCTCGGCAACCTTGGCCGACCCCGTCAGCGGAACCGCTCGGCTAAAGCAAGTCCCCGACGACCCCGCCCGCTGAGTCCCACGCCGCCTCACGCCATGAAGGCCACCTTCATGGCGTCGTCAGCCGGCCGAGGCCAGGAGGCGTTGGGCGCGCAGCGCGACCATCATCGCGAAGCGTTCCTCCGGGCAGGAGAGCCGGTCGCCGAACAGGCGTTCCAGCTGGTGCATGCGGTTGCGGATCGTCTGGGGGTGGACGTGCAGCTTGGCCGCCACCTCGGGCGCGCCGCCACGCGAATCGAGCCACGCGAGCAGCGTCTCGCTCAACCGCGCGCGCTGCTTCTCCGTCAGCGGGGCCAGCGGCGCCAGGCAGCGCTCGGCCATCGCGTCGGCCAGGAACTCGTCGGCCAGCAGCCACAGCGAGCTCAGCTCCTCGGCGAACCACACCACCGGCCCCTCGCCGA # Questionable array : NO Score: 4.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.15, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 877849-877207 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWW01000002.1 Amycolatopsis arida strain CGMCC 4.5579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 877848 29 96.6 32 ............................G CAGGGGCGACCAGGCGCCCCGGTCGGCCGAGG 877787 29 96.6 32 ............................G GACGGAGGAGGATGCCGGAGTACCGATCCGTA 877726 29 96.6 32 ............................T GTCAGAAGGCATTGACTAGCCCTTGCTCGTAG 877665 29 96.6 32 ............................G TTCAGGGTGACACCGGAATCCTGGTACACACC 877604 29 100.0 32 ............................. TCCTCGGGGAACGCGATTGGGTCCGGGATCTC 877543 29 100.0 33 ............................. GACAGTAAGCAAAATTACATTGACGCCGCAGAA 877481 29 100.0 32 ............................. TACTTCCCTCGGTACGAGCGGCCGCCGATGGC 877420 29 100.0 33 ............................. CGCCGCTGACGCGGCCGGCGCCGGGGGCGGTCA 877358 29 100.0 32 ............................. ACCGCCGGCGGGTCGTCGGGAGCCTGGGTGTA 877297 29 89.7 33 ....................A......GA CTGGTACAACGCCCCTCGCGTGGGCGCAGTCCG 877235 29 89.7 0 ...........GG...............A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GGACTACGACGGCCGCGAGGTCGCCGGCGGAGTCTCGTACGGAAGCGACGAACCGTGACCGTCATCGTGGTGGCGGCGTGCCCCGTCGGGTTGCGCGGGCACCTCACCCGCTGGCTGCTCGAGATCGCGCCCGGGGTGTTCGTCGGCACGATCAACGCACGGGTGCGGGCTCTGGTGTGGGAGCGGGTCGTGGAGATGGTCAAGTCGGGCCGGGCGATCATGGTGTACTCCGCGCGCAACGAGCAGGGCTTGGCCTTTGAGGTGCACGAGCACGAGTGGCGGCCGGTGGATTTCGAGGGCGTGCACCTGATGCTCCGGCCCAGTCCCGTGGAGGAGTCCCTGCTGAAGAACGACACCCCAAGGTCGGTCGGCTGGAGCCGCGCCAGCCGGCGCCGCCGCTTCGGCACCCGCTAGCCGGCGCCGGCACCCAGCTCTTTACTTTACACTACAAAGTAAATGAAAATCGCCTCAGGCCCGGACAAACACGCAGGTCAACAAGT # Right flank : CTCACGGTCGTTGCGTCGCGTCGGATCGGGAGTGGAAGTTCTCTGCCTCCCCTTGGGCCGCGGGAGTGGGTTTCGTTTGCGCCAGGGAGTGGAGCGACCGTTACTGGCGGACCAGTTCGGCGGGGTCGAGCTCAACCGGGAAGGTGCAGGGAATCACGGAGCGCGCGCCAGCCGGGGCGGTCACAGTCTCGATGTACTGGCCTCGGCGCAGTTCCGAGACGACGATGTGTGGTTCCGGAGTCAGCTCGAAACGCCAGTAGAACGCGATGCCGGTGTCCGCGTAGAGCTGAGGCTTGATCAACCGGTCATGTGGCTCGCTGCCCGGTGAGACGATCTCGACCACCGCCAGCACGGTGCCGGGCGGGCATCGAGTCGGGTCGGTGGCCGCGAACTCGCGCTCGATGACGGCGATGTCCGGCACAGCCAGGCGCCCGCGGGGTGCCTCCACGTTCACCGCTTCCAGGACCTCGACGGCTGCGCCCGCCGTCAGCGCGGCCTGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 888771-887517 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOWW01000002.1 Amycolatopsis arida strain CGMCC 4.5579, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 888770 29 96.6 32 ............................G GTGGTATCGCCCTGGTCTCCGGCCCAGGCCTG 888709 29 100.0 32 ............................. CTCACCTGGGACGTAGGTCCGGTCGTGCTGGT 888648 29 100.0 32 ............................. AACTCCTCCGGCGGCATCGCCGGACGGGGGTC 888587 29 96.6 33 ............................A CTGGTCACCGCGGCGATCCTCACTGGCCAGGAG 888525 29 96.6 32 ............................G CGGACCGGCGAGCGCCGCGGATTCCCGGTGCG 888464 29 96.6 32 ............................G CAGCCGCAGCCTCCAGGAGCCCAGCAAGTTCC 888403 29 100.0 32 ............................. CGCCCCTCGCGGTCGCCGTGCGCCCACTGGCG 888342 29 100.0 32 ............................. CGCGCCGCGCACGCCGAGCTCGACGCGTATCT 888281 29 100.0 32 ............................. AAGTTCGTGGCCGAGTCCCAGTTGATCCACAC 888220 29 100.0 32 ............................. ATCAACTTTTCACCCGGGTCGGGTAGTTGCAC 888159 29 96.6 32 ............................G TCACCGCCGACCGTGTGGGCGGCCCCCACCTC 888098 29 100.0 32 ............................. GCCCGAAGCTAGCAGAGGCAGACGGACCACCC 888037 29 96.6 33 ............................G CACGGCTCACCGGGCCCTGGCGAGGGTGAGCAG 887975 29 96.6 32 ............................A GACCGAACTTGGTCGCATCGTCGCCAAGGAAA 887914 29 100.0 32 ............................. GACTGGTCTGGCCGGCTGATGAACGTCTACCG 887853 29 100.0 32 ............................. GGCGCCATGGATCTACTGACGCAGCAAGGTCT 887792 29 93.1 32 .....T......................G CATTTCGCCAGCAGCGCAGGTAGCTCGGCGTG G,G [887770,887789] 887729 29 86.2 32 ...........G.A.....A.G....... AGCGGGAGGGACCCGACGCGTCAGCCGCTCGC 887668 29 89.7 32 ...........G.A..............G GGGCGGGTGTAGCTGCGCGCCTCGCCCGTCGC G [887647] 887606 29 86.2 32 ...........G.AG.............G TCACAGCGCGGAAACTAGGCCACCCCGCGTAC 887545 29 82.8 0 ..........TG.AT.......C...... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 95.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AACCATCGAACGCACTACCCCGCCCGTTGCACCTTCGAACTAGTGTCGTCCACCACAGTCGCGGAGGCTGCTCGCGGAGGGTGTTCGCGCAGGTAGCGGGAGGTGTGCGGGGCCCTGGTGGGCCGCCGCCGGGTGGGGCTCGTCGGGCCGCCGTTACACTGGGTCCGCGCACCCGTGGCCGCGGTGGACGCGGCCGTGCCGGCATAGCTCAGCTGGTAGAGCATCTGTCTTGTAAACAGAAGGTCAGGGGTTCGAGCCCCCTTGCCGGCTCCCTTCCGACCAGCGGATTCCTGGCAGCGCCGGAGTCCCCTGGTCGGTCTGGTCCCAGTTTCCGTCTCAGTTGCCCTCGATGGGCTCGTGGCGGGCTGTTCCAGTGACGACCGCGGCGACGAACTCGCCCCTTTTCGACAACCACTGCCCGTCGGAGCGCTGTCTTTACTTTTCCTGGCAAAGTAAATGAAAACCGACCCAGGGCCGGATAAACTACCAGGTCATGAAGT # Right flank : GCTTGCCGGGTACGCAGCGACGTGCCGCCGCCGGTGCTCCCCGCGCAGGGATGGGCCTAACGCGCAAGCACGTTCAGCTCGAACGTGCTTGCAAGTTAGTTGTTAGGTAGCTGACCTAAAGCTGCTCCCCGCCGCGTTCGGCGGGGCTGACCCAGTGCTTGCGAGGTAGTGGGTGTCTTCCCTGCTCATGCGGGGTATGGATCCGGCGCCATACGACGAGCTCGTACACGCGGGTAGGGGAGGTAGGAGGGTCATGGCTCGAGGGCGTGGCGGGCAGGCGGACGACAGATGGGTTGAGCAGGTCCCAGCATGCAAGTTGTGTAGGAACTTTCTTGCGGGACTAGTTGGTGCTGGTATTGGAGCCACCGTCGGGGTCAGCCTCGGGTTGGTGATGAGTGGAACGTTGCCACACCTGGCGGTGCCGTTCGGCGTCCTCGGGGGTGTCAGTTCAGCCTCTGCGGTTGCCCTGGCGGCTGCGTCTCGGCTTAAACGTCTTCTCG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.65, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //