Array 1 53585-54711 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZE01000004.1 Escherichia coli strain CVM N35912PS N35912PS_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53585 29 100.0 32 ............................. AGATCACACTTACCCTGCAAAATCTTAATGGG 53646 29 100.0 32 ............................. ACAATCACATATACGACGCGAGACGGAGATCG 53707 29 100.0 32 ............................. CTACCGGGACCGTTGGTTTCCACCATGACCAG 53768 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 53829 29 100.0 32 ............................. CTGACGGAAAGCCAATTCAACGTAATCTCAGG 53890 29 100.0 32 ............................. AATGGCGTTTATTTCTCCCATGTAGTGAGCTG 53951 29 100.0 32 ............................. ATAACAACGACACTCCGGCATATATAAAGGCA 54012 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 54073 29 100.0 32 ............................. CCAAAATCCCCTAGGAATCCCAGCACGGTGCG 54134 29 100.0 32 ............................. CGTGCCGCTCTTGAGATCGGCGGAAAGTTTAT 54195 29 100.0 32 ............................. CCAGTGGAGCCGCCGCGAATTTACACACGATT 54256 29 100.0 32 ............................. GCGAGGGGCAGCCGTTCGCGCTGCATGTTGAT 54317 29 96.6 32 ..A.......................... AAAAAACAGTGGTACTACCGCCCCGCCGAACA 54378 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 54439 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 54500 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 54561 29 93.1 32 .A.C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 54622 29 96.6 32 .A........................... GACGCCGCCGCTGCGAAGCCGTTTCCGATGTT 54683 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTATGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTTGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80411-82208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWZE01000004.1 Escherichia coli strain CVM N35912PS N35912PS_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80411 29 96.6 32 ............C................ GTCAACTGGCACCACAAAATGATGGCGTCGAA 80472 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 80533 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 80594 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 80655 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 80716 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 80777 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 80838 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 80899 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 80960 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 81021 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 81082 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 81143 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 81204 29 100.0 32 ............................. TTGCGGGCGAAAGTGTCGATTCTGACACGATA 81265 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 81326 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 81387 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 81448 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 81509 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 81570 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 81631 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 81692 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 81753 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 81814 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 81875 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 81936 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 81997 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 82058 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 82119 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 82180 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.4 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //