Array 1 133992-133783 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGOZ010000019.1 Pseudomonas cichorii strain LJDD19 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133991 28 100.0 33 ............................ GGATCGAAACAGACCCCCTTTACAGTCACTTCA 133930 28 100.0 32 ............................ ATCGAACCATTCAACTGCCATGGGCCAGTTTT 133870 28 100.0 32 ............................ AAAGAAGACCGAATCGCCTGTAGCCTGCGCGT 133810 28 89.3 0 ............A.......T.T..... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 97.3 33 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGGCTTAAGCTTGAAGTACGTGCTATGGCCGCTGTGCGTCAGAGATCTTCGGGGCTGCCGGTTTCCTGGATACCGGTTCGTCAACCTTCGCACAGCTGCCACCCATTCGTTTGACGACGTCGTTTGGCAGCTTCAATCATCCAGGAGCTACGCCGATGTACACTCTCAATCCCTCTGCGCCCTGCACCGACCAATTTGAAGCCCTCGTTTTCAACCGCCATCACCGCGCCTTGCGTGCCGTCACGTCCGACGCTCAGGCCTGGTTTTGCCTGTCGGACCTTGCGCGTCTGATGGGCAAGCGGCTCGTGATGTGAAAAGCGATTGACCTTCGCGCCCGGCAGTTTTTTGGCAAAGGCCTGCCGGGTTCTGACCCTCTTTTTTCGGCCCGCTTCAGCCCCTTTAAAATCAATGACTTATAAACACCTCGAAAAAAAAGGGTAAAACTGCGCTATGGCCATGGTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : CTTTGCGGCATCAATGACGTCTCGCGGATAAATCCGCTCCTACGCCGAGACGGCGGGTGATTACCTACAGGCAGTCCGTATCTCACCCAACTCTTTTGCCCTACCGCACATAACCCTTCGGAACCGAACAGGTAAGATAATGCTCTTATGGTTCACTGATGTGACCGAGCGTTGAGGGTGGGTGTGTGAGTGATAATAAAGTCAGGGTGAATAACCTGGTTACGGGTGATATCTCTCATCCGCAAAAAGATATCTTTTTTGCAGCCGTCGAAACCACCCGGATGCCGATGATATTTACCGACCCTCATCGCCCGGATAATCCCATCATCTTTGCCAATCAGGCTTTTCTCGAGATGACGGGCTATTCAGCCGATGAGATCGTGGGCCGTAACTGTCGCTTTCTGCAGGGGCCGGAAACGGATCGCGAAGTTGTCGCTGCCTTGCGCCAGGCCATTGCAGACAAGCAAGACATCGCGACGGAAATCCTGAACTACAAGAAG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 27182-27689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGOZ010000033.1 Pseudomonas cichorii strain LJDD19 Scaffold33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27182 28 100.0 32 ............................ AGCGCGGCCTTGTCATTCGCGCCCACCTCAAC 27242 28 100.0 32 ............................ AGCAGGCAGTCCAGTTCGGAGCAGGTGACGAT 27302 28 100.0 32 ............................ AAAAAACAGGATCTGAGCCCGCGTCTGGTCAG 27362 28 100.0 32 ............................ TGCCATCAAACCGATGGCTCCTGCCAATGCTA 27422 28 100.0 32 ............................ AGGATTCCAGCTGGCGTAAGCAGACCATCGAC 27482 28 100.0 32 ............................ TCAGACCGGCGCTGCTCTAGGCTGTCGCTGTC 27542 28 100.0 32 ............................ AGTTCACCCTGAGCGAAAAGCTGTCGAACCCG 27602 28 100.0 32 ............................ CAGCAGTTGAAGACGATCATGCGACTGTCAGG 27662 28 92.9 0 ...........CA............... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACTCAAGCAGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTATCCCGTCTGCCTGCTGGGCCTGTAGGAGCGAATTCATTCGCGAAACGGCATTCCAGACAATACATCTCCTGTGAATGTAGCAACCTCTCGCGACTGAAGTCGCATCCTACAAGTCCGGTGCCAGACCACCACTTAACGCACCCTCTTTTTGACCCTCTTTTTTCGCCCTACCATGCACCCTTTTAAAATCAATCACTTACAGAACCGGCGAAAAAAAGGGGTAAAACGACCGCAAGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGCAGAGTGCCTA # Right flank : AAAACAGGGCTATTTCGGGTATGGTCCGCTTCGTTAACTGCCGCCCAAGCAGCCCTACTCCACTTCATAACACCAAATCCTACACCCCACTCACGCCCGCCCTACAACCACCCACTCCCCATCCCCCCACCCAAACTGAATCGCCTCATTTAACCACCCCCCCCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCAGCAGCGACCGGGTTTGGCGACCCGGTTTAAAGATAAATTCCCCCATCGCGAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTATCCGATTCACCCTGTACATCTCACTTCGAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTGCGCGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //