Array 1 316977-315698 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDJ01000001.1 Riemerella anatipestifer strain RCAD0125 ZB100000, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 316976 47 100.0 30 ............................................... AATAATGACTAATAAATGCGAACAAGTAGA 316899 47 100.0 30 ............................................... AAGTAACAGGTACTTGTTGAACCACGAAAA 316822 47 100.0 30 ............................................... TAATATTATGAACATTTGTAAAATCCTTAA 316745 47 100.0 30 ............................................... TCAACTATTCAGCAAATGTAGACGATACAG 316668 47 100.0 30 ............................................... AGCACGATAGAATTATGCTCATTGAGTTAA 316591 47 100.0 30 ............................................... AATTAGTTAATTCTCTGGGCGAGGTAGTTT 316514 47 100.0 30 ............................................... TTTCGGTTGCTATCCGAAACGATTCGGATC 316437 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 316360 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 316283 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 316206 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 316129 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 316052 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 315975 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 315898 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 315821 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 315744 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 17 47 98.1 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 1368-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDJ01000005.1 Riemerella anatipestifer strain RCAD0125 ZB100004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================= ================== 1367 36 97.2 30 ................T................... TAAAAAATAGAATAAGAAATATTCCTATCA 1301 36 97.2 30 ................G................... CATTTCAGAGTTGCAGATTAAATTGGTTGA 1235 36 94.4 30 .......T........G................... TTTAGCTTCATTCTCTGTACCTTTTAGAAT 1169 36 97.2 30 ................T................... AAAGGCTTATCGCCTCTATATTTTCAAAAT 1103 36 97.2 30 ................T................... CTGTTGTTGTAAATATAATAGGTCCTATTG 1037 36 97.2 30 ................T................... CCTTTTCCTCATCACCTTCGTAGATGCAGA 971 36 97.2 30 ................T................... TTCATTTATACTTCTAGGTAACTTAGTTAA 905 36 100.0 30 .................................... AAAGGAACGCTACTCGTTGTAGGAAGCACA 839 36 100.0 30 .................................... TAAGATTTCTGGATTTTCGTATATGTTGCT 773 36 100.0 30 .................................... TGCTTTGTTCTTCTCCTTCTTTTGTTGCCG 707 36 100.0 30 .................................... AGCCACAGCGTTTGATGGTTCTACTGCTAT 641 36 100.0 80 .................................... AGATCATGAAAACATTCAATTCTACCTTCCGTTGGGACTGCTCTCATTTTAGCTCACAGCTTTGTTGTAGTTTCAGCGGA 525 35 86.1 80 ...C...A....AG..-................... GAGTTAAACAATGGCGTATTATTCGTCCAAGTTGGGACTGCTCTCATTTTAGCTCACAGCTTCGTTGTATTTTCAGCGGA A,T [514,521] 408 35 83.3 81 ...C...A...G-.A.............C....... TTTTTTCACGAGTATCTGCTAAGTCTGATTGTTGGGACTGCTCTCAGTTTAGCTCACAACTTTGTTGTCGTTTTCAGCAGA A,T [391,404] 290 35 86.1 81 ...C...A...A-.A..................... TTTATTTTGGTATTTTAAGTTGTTGTGAGTGTTGGGACTGCTCTCAGTTTAGCTCACAAGCTTTGTTGTTGTTTCAGCGGA A,T [273,286] 172 35 83.3 0 ...C...A....AG..-.............A..... | G,T [161,168] ========== ====== ====== ====== ==================================== ================================================================================= ================== 16 36 94.8 44 GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Left flank : TACCGTCTGCTGGCGTATATGACCGACCAAGACAACCCCAAAAACCTCTTAAAATGGGAAGTTCCCAAAGGGCAAAAGGATAAAATTCATTATATTAACCGAGCCAATGCCCAAGCCTTTCTAAGGGAGCTCCCAGAACTATTTTATGGGGAGGGCTGTGGGCTCTTCTTATCTGAGGAAGTCACCAAAAAGTTTTTTGAGTACCGTAGTATCGTTCATAAGCTCCTACTTGCAGAGCAAAACAGCACCGAGGCGGAGTTCCGACTAAAAAACGAAGAGGCGGCTACCAGAATGAAGGTGCTGCATCATAAGTTGAGCCAAAGCATTAGGCAATGCCTAAAAATAGAACAACGCGATTTAAAAGCGTTGTAAAGAAAAGCGTTCTTTGAAACATCGAGATAAAACAAGCACCCAAAAAAGACAATACCCTATCATAACAATAATGCACAGCATTTGAAGGGTATTCACAACACCAATAAATACAGCTTATTTGCTCCTAA # Right flank : CATATTAAGGCTAACCCGTTGTGCATTATGAAATGAAAAAAACAAGAGTTGTTTATTAGACTGAAAATCAGTATATTGTTTTTGCTATAAAACGATATAAATGAACAACTTAGAGCAAATATATGAAAGAATTTTG # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.92, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGACTGCTCTCACTTTGAAGGGTATTCACAAC # Alternate repeat : GTTGGGACTGCTCTCATTTTGAAGGGTATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [30-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //