Array 1 66746-65997 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPDT01000010.1 Pseudomonas cichorii strain 474 Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66745 28 100.0 32 ............................ ATTGTTTGAGAATGACTTTATAGCGCGTGGCT 66685 28 100.0 32 ............................ TCTCAGCAGTACGCCGATCCGGCGCATCCGTG 66625 28 100.0 32 ............................ CGCCGGGCAGCAGCATGTATATAGGGGAGAGG 66565 28 100.0 32 ............................ GTATTGCGCAAACAATCTCATCGACTCAGCAG 66505 28 100.0 32 ............................ TATCCGCCGCCACGCCTTGCCTGCAAGGTGCT 66445 28 100.0 32 ............................ CGGCCCGGCTCCACGTTGGCAATCTGAGCCAT 66385 28 100.0 32 ............................ AGCGCACCTACCAGCCAACCCCGGACGCCTGC 66325 28 100.0 32 ............................ CGGCAACGTAGATAGCACGGCAGGTCGCAGTA 66265 28 100.0 32 ............................ ACATGTACAGCCCGCTGTCCGGTATTGATGAG 66205 28 100.0 32 ............................ GAAACTGGATGTACCGCCGTTCGCGCCGTTTG 66145 28 96.4 32 ............A............... AAGACACGGCGCGCTCTTTGCCGGGGCTTGGT 66085 28 96.4 33 ............A............... ACAAGGCCCGTGCCAGCACCGGCAATCATGCCT 66024 28 89.3 0 ...........CA...........A... | ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.6 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : TTCTGGTCAGTGAGTACGGCGTGTTTGCAATGCTGGTTCATCATTACATCCCCGAGAATCGCGCCCTGCGTCACTGGCTGACCCATGACGTATTGCCGATTCTGCATCAGCAGCACGCTGTCACGGGCGATCAGCCTTGCCTGAATCAGATGCAATGGTTCGGCAACGCACTGAGCGTGTTGCAATGGCGCAGTGAGTCGTGGATTCGGTTTCGGGATATGCCCCATGTGGTGATGGAAGTGCCTCCCCAGCCCAGACGAGGAATATGGCGCAAACTGCTGGAAGCCTTGAGCGGCAAGCGGCTGGTGATGTGAAAGACGATTGACCTTCGTGCCCGGCAGGCTTTTGGCAAAGGTCTGCCGGGTTCTGACCCTCTTTTTTCAGCCCCCTCCAGGCCCTTTTAAAATCAATGACTTATAAAAGCCTCGAAAAAAAGGGTAAAACAGCGCTCTGGCCATGTTTTTGCTTTTAAAACGAGGGGTTATTGGGCAGAGTGTCTA # Right flank : ACGAATTGCTCCAGAACCTGAAATTCCCACCCCCACTCTTTTCCCCCTCCCTATATAACCCTCCGGAACCGAACAGGTAAGATAACGCTCATATGGTTCACTGATGTGGCCGAGCGTAGAGGGTGGGTGTGTGAGCGATAGTAAAGTCCGGGTGAATAATCTGGTAACGGGTGATATCTCTCATCCACAAAAAGACATCTTTTTCGCAGCCGTCGAAACCACCCGGATGCCCATGATCTTCACGGACCCCAACCGTGAAGATAATCCGATCATCTTCGCCAACCATGCCTTTCTCGAGATGACGGGGTATGAAAGCCATGAAATTGTGGGCCGCAATTGCCGCTTTCTGCAGGGCCCCGATACGGATCGCGAAGTGGTCGCCGCCTTGCGCAATGCCATCGAGAACCGGGAAGACATCGCCACCGAAATCCTGAACTACAAGAAGGACGGCTCGTCGTTCTGGAACGCGCTGTTCATGTCGCCGGTGTTCAATGACAACG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 77427-77039 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPDT01000010.1 Pseudomonas cichorii strain 474 Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77426 28 100.0 32 ............................ ATGATGCAGTTCCGTTTCAGTGGGTGTGTGCG 77366 28 100.0 32 ............................ TGAAAATGGCAAACCTCATGCCCAAGCGATCC 77306 28 100.0 32 ............................ GCGAGCTGGGCAACGACGCATATCTTAGCAAG 77246 28 100.0 32 ............................ CGAGAGGAGGACTGATGCAGAGCATCCAGAAC 77186 28 100.0 32 ............................ GTGACCATGCCCAGCCAGGCCATCTTGCTGAT 77126 28 100.0 32 ............................ ATGAGCGCAACGATATCTTTGCGCATGCAGTC 77066 28 78.6 0 ............A.......T...ACTC | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.9 32 CTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : CTTGAAAAATATGGCCCCCTACAGTCTCCCTCGGCACCAAACAGCAAGACACTCAAGCGGTTGCAGAGCTTGAGGTGAAAAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCTTGGTTTTTGATGATTGCCGGGCCTGTAGGAGCGCGCTTGCCCGCGACGTTCGTACAGGCAATGCATTTTCATTGGCAGGGCGACAGTCGTCGCGGGCAAGCGCGCTCCTACTTCAATCGCAGCTACCTGAGTAGAAGTGAATTCATTCGCGAAGACGGCATTCCAGACAATACACCTCCTTTGAATGTACCGGCCTATCGCGAATGAATTCGCATACAGGTCCGGCACCAAACCACGACTTCAAGCACCCTCTTTTTGACCCTCTTTTTTTCAGACTCCGTCATTCCTTTAAAATCAACAAGTTACGGAACCCTCAAAAAAGAGGGTAAAACGCCCCCAAGCAGGTGGTTTCTCTTTAAAAACGGAGAGTTATAAGGCAAGGTGTCTA # Right flank : CACTTCATAACCGTCAAATCCTACATTCCCACTCACTCCCGCCCTACAACCACCGACTCCCCATTACCTCCCCTAAACTGAATCCCCTCATTTAACCCACCCAGCTCCCAAGCTACCCTTCCCGTCATTCGCTGCCCCATCAGCGACCGGGTTTGGCGACCCGGTTTAAAGATAAATTCCTCCCCATCGCAAAGCAGTCGATTTATTCTTCTGCGCACTGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGTCTGCCGGGTTTATCTTTTTACCGGTTCGCCAACCCTCACACAGCTGCCTCCATTTGTTTGGCGACAATCCGTGGCAGCTTTTTTCAGCGACCATAAAAAGTGTGCCTCTATGCAAAAGCTTCTATCCGATTCCCCGTGTTCATCCGCCTTCGAAGCCACCCTCTTCCTCCGCCACAGCCGCATGCTGCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGTCTGAT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //