Array 1 360476-358976 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJQ01000002.1 Campylobacter lanienae strain P154 ERR473911.12448_4_59.2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 360475 37 100.0 36 ..................................... CAAAATCCGAGCGGAAACATCGTGATAGATTTTAAC 360402 37 100.0 34 ..................................... AAATCCACGCTACAGAGATTTTATTTACCCATAA 360331 37 100.0 36 ..................................... TATTATAAGTTATTTTATTATATAATTTCATTGTTA 360258 37 100.0 36 ..................................... ATGTATAAGATCTGTTCAGTAGTTCCCACCATGTCG 360185 37 100.0 36 ..................................... GAGAATGGCTCAAGAGCTACACTATAAGCGAGTATT 360112 37 100.0 36 ..................................... AAACTGCGCAAACCACACCAAAAGAGGAAACACAAA 360039 37 100.0 34 ..................................... TTAATCATAGGAGTTAAAATGAAATTAGAGAATT 359968 37 100.0 38 ..................................... TTTGTCTATATTTTCTTTTATAATTTCAGATATATAGC 359893 37 100.0 36 ..................................... TTAGATAAAGCCTTAAAAGATTTTAGAAATTATCAT 359820 37 100.0 35 ..................................... AACTTGCTATATTAGTGAAATAATTAAAGAGAATA 359748 37 100.0 37 ..................................... TCAATTATCCCCTCTTCATATGAATATATATTGATAA 359674 37 100.0 38 ..................................... AATATAGAGCTATTGAAGCCCTTGGCTCAACAGATATT 359599 37 100.0 38 ..................................... GTAGATGGGACTTTAACGAGCTACAAACCATGCTTAAA 359524 37 100.0 36 ..................................... TTTTTTTGCCAACTCTCTCAGGCCGCAATAATTAAG 359451 37 100.0 35 ..................................... TTTTAGAGCATTTGATGAGATTTTAGAGCAAATAC 359378 37 100.0 35 ..................................... CATCAGCTGTTTCACACTCATCGCCTACCCAATGA 359306 37 100.0 36 ..................................... AGATAGTGAAGCTCTAGAATTTGGGCAAAGTGAAAT 359233 37 100.0 37 ..................................... GCGATATGTTGCTAAGATTTAGAAGTGAGATTATCAA 359159 37 100.0 37 ..................................... TTAGATAAATTGATAGCACAACTTCAAGAGAATGTAG 359085 37 100.0 36 ..................................... CAAATTCGCTAATATGAGTAACGAAAATTACGATGA 359012 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 100.0 36 GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Left flank : TAGATAAAGCAATTAAAGCAAAGTTAATATAAAGGAGAACAGAATGCAAAACACATATCTAGATAAGGTTAGTGAAGCTCTAACGCTTTTAAATAGATTAGATAATTTTAAACCGCCTACTAATGGTAATGGTAATGCCGTAAAAAGCTACTCTATAAAGCTTTTTATATTGTTATTTACAATAGCAAAACACGAAGGAGAAACACAGGCTTTCTATGCTGAGTTACTAGGCTGGAATAAGGCTAATACCAGCATTCACGCTAGATATCTCTATGATAATGGTTTTATAGGTAAAGCCTATGATGATAGAGATATGAGAAACTTAGCTAGAAGGTTATTTATAACGCCAAAAGGAAGGGAGTTTATAGAAAACTTAGTAAGAAAGGAGAGAAGTTAAGCAAAATTATAAGAGGGTCTTATAATATAAGCAAAGGCGATAAGGTATGTTTAAATTAAAAGATGGTCGCTACAAAAGGGATTACCACCGCACTTAGATACTC # Right flank : TCCGCACAAAATGCCCTGTTTTAGGGATTTTGTGCGGAGTTAATTGTAAAATTTTTTCCACTTAGAAAAAAATCGCAAAAAGTGGCGAATTTGTGGAAAAATATGTTATAATCCAAGCGCAAATTATACCATAATCTAGCTTATAGCGTTTGAAATCACCACAAGGTGTTTTCATATCGGGGCAACTGCCTTTGGCACCCCCGGTTATTCTCTATCATCACAATAATTTTTAAACTCACATTGCGCACAAGCTGTAATGCTAGCTGAGCTTTGGGGGAAATATCCTTTTTTTAATAGATCTTGAATTTGCGTTAGTGTTTTATCAAAATAAGCTAAATCCTCTTTATAAATTTCAAAGATTTTAAATTTTAGATTATTTGAGTAGCATAAAATCACCCTATGAAAAGGCTTTTTAAAGTGCTTACTAGCAAGTTTAGAATATGCTATAAGCTGCATTTTTGCGCCCTTGCTTAAAATTGGCTTTGATTGATTTTTAAACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAAACCAAGTTGGATTGTGGTATAATTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 455478-456643 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJJQ01000001.1 Campylobacter lanienae strain P154 ERR473911.12448_4_59.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ================================== ================== 455478 41 78.0 34 ....T.AGA.....C....T...T..T.........A.... TTTTGCAACCAGCAAACATCCTAATCATATTAAC 455553 41 100.0 34 ......................................... TTTTGCAACCTCTAAACATATAACTCATAACAGC 455628 41 95.1 34 .......................T...C............. TTTTGCAACCAGTAAACATATTTTCCATATAAAT 455703 41 95.1 34 ...................T...T................. TTTCGCAACTAGAAAACATCCCACTCATCTTAAC 455778 41 92.7 34 .......................T...C........A.... TTCTGCAAACAGCAAACATCCCATTCATATCATC 455853 41 85.4 34 C.............C....T...T...C........A.... TTCTGCAAACAGCAAACATCTGACCCATATCAGT 455928 41 90.2 34 C.............C........T...C............. TATCGCAAAGGCAAAACATCCAGCTCATATTAAC 456003 41 95.1 34 ......................C................T. TTGTGCAATTTCTAAACATCTCACTCATATCAGT 456078 41 90.2 34 ..............C....T...T...C............. TTTCGCAAAAAGCAAACATTCCGCCCATATTAAC 456153 41 90.2 34 ..............C....T...T...C............. TCTTAACTTTATAAAACATAGAATTCATATACTT 456228 41 82.9 34 ....T.AGA..........T.........A......A.... TTCTGCAAACAGCAAACATCTCACTCAGATCAGT 456303 41 87.8 34 ......A.......C........T........T...A.... TTGTGCAACCTATAAACATCTGACCCATATCAGT 456378 41 95.1 34 ..............C....T..................... TTCTGCAACCAGCAAACATCTCACTCAGATCAGT 456453 41 95.1 34 ......A.......C.......................... TTTCGCAACCAGAAAACATCCCACTCATATTAAC 456528 41 92.7 34 ..............C.A..T..................... TTTCACAATTATAAAACATCCAGCTCATATTAAC 456603 41 100.0 0 ......................................... | ========== ====== ====== ====== ========================================= ================================== ================== 16 41 91.6 34 TACACTGCTTACATTCCAGCTATCAAGTGGTTGATTGAAAT # Left flank : TAAGACAATCGGGCAAAATACTACTTGATGCAAATATGAATGAGCCAATAGCTAGCGAAGTGATAGATATTTTACGCCTATTTAGAAGTGATATAGAAATCAAAGATCTACACCTTCTAAAAGTAGCAAATGACAAATATACTTGTATAATCTCTTTAAATTCCATTAATCCAATTGATATAAATCTTATCAAAAAAGAGCTATCAAAGCACGAAGAACTAGTTCATATAATAGTGGAAATATATCCCTATTAAGTATTTTTTAAGTATAGGGGGTAAAATTATTCTTAATTTTAATAACAAGGAGAAAATATGAACAAAATTTTAGCTATTATATTATTTACTAGTGTTTGCTAAGCTTTAATAAGTATACCAAAGCAAGTAGCTTTAAAATGGTATCTCATCATCATCATCTTTTTCCATCAAATCATACATATTAGTAAATTTAGGCTTATTCTCATCATTGATTTTGCAATCATCAAATATCCCACTCATTTTAGT # Right flank : TTTTCGCGACCAGCAAACATCCCACTCATATTAGTCACACTGCTTACATCCCAATTATCTATACCGCTAAAATCTTCACGCCCACTCCAAGCAAACAACTCACTCATATCAGTTATAGCACTAGTATCTATATCGCCTAAATATATATCTTCATCATAAATTAAGCCCTTTAGCTCATCTTTGCTTTGTGGTGCATATAGCTTAATAGGAAAGAAATACTCCATATCCGCTACAGCTGTAATGTTGTAATTACTAGCAATACTCTTAGCTATAGAGCTATCTTGACAGATGATACCAGCTATCATATCAATTGACAAATGCGTAGGCACAAGCGCCTCAGCCATCATTTTATCTATTTTAGATTGTTTGATGGATCTATCGGCGTGGTTCCAGTCTTTTGACATCACCTCACTCCAGCTGATAAACTGCGTATTTAGTAAGTCGCTAAGCTCATTTGCACATTCATATCTAGCAGCAGTGGCACTAGCGTTAGTAAATAT # Questionable array : NO Score: 5.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACACTGCTTACATTCCAGCTATCAAGTGGTTGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [16-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //