Array 1 987638-989617 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063330.1 Salmonella enterica subsp. enterica serovar Albany strain R17.2117 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 987638 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 987699 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 987760 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 987821 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 987882 29 100.0 32 ............................. GAATTGCGGGAATTAATATTAAATCTGGCGTC 987943 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 988004 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 988065 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 988126 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 988187 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 988248 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 988309 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 988370 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 988431 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 988492 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 988553 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 988614 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 988675 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 988736 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 988797 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 988858 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 988919 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 988980 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 989041 29 96.6 32 ...C......................... ACCTGATTGAGGTAATCATGAAAAAAATATTA 989102 29 100.0 32 ............................. GCTGGAGCGCAACTGCCAGTGACTACAGAAGC 989163 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 989224 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 989285 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 989346 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 989407 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 989468 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 989529 29 100.0 32 ............................. ATTTGCGTCAGACTACCGACAGGGGCTGGTAT 989590 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1006175-1008951 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063330.1 Salmonella enterica subsp. enterica serovar Albany strain R17.2117 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1006175 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 1006236 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 1006297 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 1006358 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 1006419 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 1006480 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 1006541 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 1006602 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 1006663 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 1006724 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 1006785 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 1006846 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 1006907 29 100.0 32 ............................. TATTTCAATATTCATTCATTGCAGGCGTAGGA 1006968 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 1007029 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 1007090 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 1007151 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 1007212 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 1007273 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 1007334 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 1007395 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 1007456 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 1007517 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 1007578 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 1007639 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 1007700 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 1007761 29 100.0 32 ............................. TGCACATACATCCTCACTTACTGGGTCTGACA 1007822 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 1007883 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 1007944 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 1008005 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 1008067 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 1008128 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 1008189 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 1008250 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 1008311 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 1008372 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 1008433 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 1008494 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 1008556 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 1008617 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 1008678 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 1008739 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 1008800 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 1008861 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 1008922 29 100.0 0 ............................. | A [1008949] ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //