Array 1 4064543-4062879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027412.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FDAARGOS_319 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 4064542 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 4064481 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 4064420 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 4064359 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 4064292 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 4064231 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 4064170 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 4064109 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 4064048 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4063987 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 4063926 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 4063865 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 4063804 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 4063743 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 4063682 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 4063621 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 4063560 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 4063499 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 4063438 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 4063335 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 4063274 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 4063213 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 4063152 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 4063091 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 4063030 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 4062969 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4062908 29 96.6 0 A............................ | A [4062881] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4081499-4080800 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027412.1 Salmonella enterica subsp. enterica serovar Heidelberg strain FDAARGOS_319 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4081498 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 4081437 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 4081376 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 4081315 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 4081254 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 4081193 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 4081132 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 4081071 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 4081010 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 4080949 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 4080888 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4080827 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //