Array 1 1620005-1616855 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016447.1 Acidovorax sp. RAC01 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1620004 37 97.3 33 A.................................... ATGAACACTGCGCCAGCGCTGGCTGTTTGATCC 1619934 37 100.0 34 ..................................... GTTAGCGCCCGCGTCAATCTGCAATTGCAGTTGC 1619863 37 100.0 33 ..................................... CACTCGCCGCGCAGCACGGCAATGCAGTCGTTG 1619793 37 97.3 34 C.................................... TATGGTGCCCACCAGCACAACGCGGGGGCGTACA 1619722 37 97.3 34 C.................................... GCCTCGGCCAGCGGCCAAGCAGGCAAGGCCGAGA 1619651 37 97.3 33 A.................................... ACGCTGATGTTGTTGGACGTGCGCGCGGCACCA 1619581 37 100.0 33 ..................................... CACCCCGGTCAGCAGCCATGGAATCGAGGGAAG 1619511 37 97.3 33 C.................................... TGCCGCGTGCCGTTTATGCACTGCTTGCGCTAT 1619441 37 97.3 35 T.................................... GGCAAGGCCGTGGACGTGCCCGAGGACGACGCGCA 1619369 37 100.0 38 ..................................... CATCTGACCCGTGTCGTCAAACTGGTAATACTCAGACA 1619294 37 100.0 34 ..................................... CGAAATGCGGTGCGCCAACTTCTGACCGAGGGAG 1619223 37 97.3 33 A.................................... ATCATTTCCGACGCGCCCGACAACGACCGCATC 1619153 37 97.3 34 A.................................... ATCACCGAAGGCGTCGTCACCATCGGCAAGACCA 1619082 37 100.0 33 ..................................... ACGCTGAAAACGCTCAACTGCGCGAGCAAAACA 1619012 37 97.3 35 C.................................... TTCCTGGTAGGCGCGCTTGCGCTCGGCGGCGCGGG 1618940 37 97.3 33 C.................................... CAGCGGTGCGGCTGTAACCGGGGTCGTGTTGTG 1618870 37 97.3 33 C.................................... CAGTCGGTGCCGAACAGCTCCCACTCGGCACGC 1618800 37 97.3 32 T.................................... CACTGCAGGTTTGCCGGGATGCTGTTGCCCAG 1618731 37 97.3 33 C.................................... TGGTTCGTGAAAATGCGCGACCGCAGGCGCTCG 1618661 37 97.3 35 A.................................... ACCACCGCCGAAGCAATGGAGCAAGGCTGCTATCT 1618589 37 100.0 35 ..................................... TTGCTGTGCAGGGTCTAGCAAACGCATTAGCAAAA 1618517 37 97.3 34 T.................................... TTGTTGCTGCGCTTGCGCGCCTTGGTGGCCAGCT 1618446 37 97.3 33 C.................................... AACAGTGCAAACTACGATGCCCCGATGTGGCAA 1618376 37 97.3 34 T.................................... TGCGATGTGTAAGCGTGTATGCCGCTGTCTGGGT 1618305 37 97.3 32 T.................................... CCGCGATACAAACTGGCCTATCGTGTGGCCCA 1618236 37 97.3 33 C.................................... AAGAAGTACCGCCCGCGTGGAATGGATGCCAGC 1618166 37 100.0 33 ..................................... AAGAAGGTGGACCGCCGCCTGTGCGCTTACTTC 1618096 37 100.0 34 ..................................... AGCACCACCCAGCAGCAAGGAAATGAGGTCTTGC 1618025 37 100.0 32 ..................................... AAGGTGAGTCCCGTCGAGGTGGCCAGCCTGGC 1617956 37 97.3 32 C.................................... ACCACGGAGGCGTCGCCGAACGTCATCCCCAG 1617887 37 97.3 33 C.................................... AGACATGGTGCCCCACAAATGCGAAGGGCCCGC 1617817 37 97.3 32 C.................................... AGCAAGCAGCCTGTTGTGTCGCGTCGTGCTGA 1617748 37 97.3 34 C.................................... TGTGCCGGGCAGCTCGCAGGCTTGCGGGCAGGGG 1617677 37 97.3 35 C.................................... TGCGCACGCCCCGGCCATGTCGCCTGCATTTGCCT 1617605 37 97.3 33 T.................................... AGTGCAGCGAAGTCCAGCAGGCCATAGGAGCGC 1617535 37 100.0 32 ..................................... ACCCCATCGGCTGCACTGCTTGCCAATGGTGG 1617466 37 97.3 37 T.................................... GGCCACAGCCCCAGCGCCAGCAGCTTGCGGCGCGTGT 1617392 37 100.0 33 ..................................... GGCAGTTCGGCCAGCACCTTTTCACCTACGCCC 1617322 37 100.0 34 ..................................... ACCACCAGGTTGCTGACCATCCAGCCCATCACCG 1617251 37 97.3 34 ..............C...................... TCGACCATGGTGATCACATCGGCCACCTGGCGCA 1617180 37 100.0 33 ..................................... GTCCTGCACCACGCGGTCCAGGATCTTCGTGAC 1617110 37 100.0 35 ..................................... CACCTCTACGCGGGCCTGAGCCGCGTGGATGTTGC 1617038 37 100.0 36 ..................................... AGGCGCCAGCGGTCGGTGATGGCGCCGTTGTTGAGC 1616965 37 100.0 37 ..................................... GTTCATGCGAGACCTCACAATGTTCGAGTACGAGGCG 1616891 37 94.6 0 .................T.................T. | ========== ====== ====== ====== ===================================== ====================================== ================== 45 37 98.3 34 GGTTCGCCCGTCAGTGACGACGGGCGTGGATTGAAAC # Left flank : GCCAAGCTGTGCGAAAGCACCGGGCAGCGCGTGCAGAAATCGGTATTCGAATGCCAGCTGGATGTAGCAAAGTTTGAATCCCTGGAGCGCCAGCTACTGGCAGAAATAGACCCCAGGACAGATTGCCTGCGGCTCTACCGCGTTCCTGAAACGCGAGGCTTTGAGGTAGTGGAGCACGGGTCTTTCAAGGCGGTCGATTTTGATGGACCCATGGTGCTGTAGCGTGTTCAGAGCACTCGGCAGAGGGCATTTTTACCCGTACTGCCGTGAGAGGGCGATTCGCCACAATAGTCGTGATGGCTCCCTGCCGTGCTATGGTGATTTTTGCGAACGCGGAGTGGTCTCATTCCGCAATAAAGGTTCGCGCGCTTCGCAACCCCTTGTATTCGTTGAGATTTTTGATTTTGGACGCGACTGTTTCTTGGCATCCATGGCTTTCATTGGCAGGTTCGCGGACAAGCAGGGAAAAGCTTTTTGTCAACAAGGTGTTGAAGGCGCAG # Right flank : CGTTGTGCGCCACCACGACGCAGCGCCGGTGATGCTCGCCTATCACCTACTGACCGGACCGAACCAGAAAATCCTTCGATGGCGTTCACCACCGCATTGAACTATTTTGGGCCTTGCGCCGCGCAGTGGACAATGGCCTACAGCGCCAGCGCCGCGCGTTGCTTAGCATGAAGTGCTACTTCACACAACGCAGTTTGAACAAGGCACCCCATGAGCCCACCGCTGGACCACAAGACTGAATACCGCGATCAAGACAAGACCCCCTCGGCCCCCGTGCCCGCCCGCACCGAGCGCCGCACCGACACCACCCGCCAGCCGCAGCCGCAAACACCGGGCAGCGGGCCCGAAGACCTGTCGGGGCCCGAAGGCCGCCTGCCGCATGAACGCGACGAGGCGACCGCGATGACGGGCGGCATTCAGTCAGAGGAAGGGAAGCAGGCTTTCAAGGACCTGGAGCGCGGGCTGAAGGACACCGACAAGGGCCCGCCGATGGACCGTGC # Questionable array : NO Score: 8.68 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCGCCCGTCAGTGACGACGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.80,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //