Array 1 5064560-5064049 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RKIW01000001.1 Pseudomonas putida strain FDAARGOS_516 unitig_0_quiver_pilon, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
   5064559	    28	  96.4	    32	T...........................	AGCGACTCGCCTTGGTACATGGGCGAGAAGGC	G,GT [5064552,5064554]
   5064496	    28	 100.0	    32	............................	GCGAGGTGTGCTCATTTTCTCGATACTCGCTT	
   5064436	    28	 100.0	    32	............................	AAGAGGCTCGACAATCTTTGGCCCGTTCAGGA	
   5064376	    28	 100.0	    32	............................	CTCTATTCACTGCCGCGATATTGCGGCCAAGG	
   5064316	    28	 100.0	    32	............................	TGGGCAATCGATCCGGCCAGGTCGATGCCTTC	
   5064256	    28	 100.0	    32	............................	ATGCCGCGCAGCACGTCGGGGAACAGGTCGCG	
   5064196	    28	 100.0	    32	............................	TGCCGCCACCGGCGGCGTGGAGACCATCCATG	
   5064136	    28	  96.4	    32	.............C..............	CAAGTCCAGCCCCGCACTGGGCCGAGGCCGTA	
   5064076	    28	  89.3	     0	...........C............AC..	|                               	
==========	======	======	======	============================	================================	==================
         9	    28	  98.0	    32	GTTCACTGCCGTGTAGGCAGCTCAGAAA	                                	       

# Left flank :   CGCTCAACCGGCGCGCTCTTTCTGAGCTGCCTATACGGCAGTGAACTCACCACCCTACTGCTGCGCCTGCTTGAAGACTTTTTGAGCTGCCTACACGGCAGTGAACGGCGAAGTCTTCCCAGCCATGAAGCCCGACATTTTCTGAGCTGCCTACACGGCAGCGAACAAAGCCAACGGCACTGACGCCAATCAGCTGGTTTTCTGAGCTGCCTACACGGCAGTGAACATGTGATCGCCGCAGGCATCCGCATCACCGTAGTTTTCTGAGCTGCCTACACGGCAGTGAACATCGACCTCGATGCCGAAAGCGGCTGCGAGTTTTTCTGAGCTGCCTACACGGCAGTGAACACTTCAACGAAGTCGTGAATGCCCCGGTACTGTTTCTGAGCTGCCTACACGGCAGTGAACATGACCGCGCAGCAAATGCGCATCGAGCGCTTTTTCTGAGCTGCCTACACGGCAGTGAACGTCACGGCGCCCTGGCCGCGGTTGAGATTGTT
# Right flank :  CAGAGCCGTAGCGAAACTACTTCTGGTTACTCGCCGAGGGTGGCACGAACTACGCCGTGCTCGCGGCGGTTCCGCGCGCCGAAAAGCCTGCTCTCCTACCAGGAGCCGTATTGCAGCCTTTAACGTCGGCTCAGTGCCAAACGTACAGCGAATAGTACAAAGACCATGCCGGTTACTCGATCCATCCATTTGATGACGTTTCCTTTGCGCAGGATGTCTGCAAAGGAGTGTGTCGCACTGATCAACCCCACCGCCCAGATCAACCCCAGCAGCACATGAATGCCCACAAGCCCGAAGGTCCATGCAATCAGCGCCTGGCCTTGCGGAATGAACTGGGGCAGAAACGACACGTAGAAAATCCCGACCTTGGGATTGAGCAGATTGCCCATCATGCCCTTGAGGAACCAATTCGCTGCCGGTCGCCCCTCGGCCTCGGCAGGCGCCAGCGACTGGCGTGGGCGCAGGAGCATGTTCACGCCCAACCATGCCAGATAGGCCGC

# Questionable array : NO	 Score: 6.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCACTGCCGTGTAGGCAGCTCAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [6,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.70,-8.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//