Array 1 107691-106275 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUJC01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033885 CFSAN033885_contig0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107690 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107629 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107568 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107507 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 107446 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107384 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107323 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107262 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107201 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107140 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107079 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107018 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106957 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106896 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106835 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106773 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106670 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106609 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106548 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106487 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106426 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106365 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106304 29 96.6 0 A............................ | A [106277] ========== ====== ====== ====== ============================= ========================================================================== ================== 23 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGTGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125499-123823 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUJC01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN033885 CFSAN033885_contig0005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125498 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125437 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125376 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125315 29 100.0 32 ............................. GCAGAGGTTGAGTAACTCCTCGTCCACGTCGA 125254 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125193 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125132 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125071 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125010 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124949 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124888 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124827 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124766 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124705 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124644 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124583 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124522 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124461 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124400 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124338 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124277 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124216 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124155 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124094 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124033 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123972 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123911 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123850 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //