Array 1 6827-7906 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQZ01000120.1 Azospirillum sp. TSO22-1 Contig55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6827 32 100.0 35 ................................ TCATTCGCGCTGTGGGGTGTCAAGGTGCCGGAGGG 6894 32 100.0 34 ................................ ACACCTGCGTTGCTGAGAAACTGGCGCACCGACT 6960 32 100.0 34 ................................ ATCCGCCGGCAAGAGGCCGCAGACGCCCGCAACG 7026 32 100.0 33 ................................ CACATGATGGCGGCGCTCGCGGAGTTCGAGCGC 7091 32 100.0 32 ................................ ACCGCCCTGGCGGCGGATGAGTGCCACGCGCT 7155 32 100.0 33 ................................ GAGTCCGTGATGGGCGACATCGACAAGGTCGTC 7220 32 100.0 33 ................................ ACCAGGAAACCGGCCTGCGTCCGGAGTCCTGCC 7285 32 96.9 33 A............................... ATGCCGAGCACTTGGCCGACGCCCCAGCTCGCC 7350 32 100.0 33 ................................ GCCGTCGGCGACCCGGTCAAGCCCTCGGACATC 7415 32 100.0 34 ................................ TGGATCCAGACGAAGGGCTATCCGGACACCTACC 7481 32 100.0 36 ................................ CAGCGCCTGTAGCGGACGCTCGATGACGGCCTGACT 7549 32 100.0 34 ................................ ATCCGCTGGTACGAGCGCGGGGCTAAGCGCGAGC 7615 32 100.0 33 ................................ CTGGACCTGCGCATTCCTGGCGCCGCAGCGCTC 7680 32 100.0 32 ................................ TGGTGCAAGGCGGTGCTCCGCCTCTGGAGGGA 7744 32 100.0 33 ................................ GCCACCGAGCCGGGCGACGCGCCGGCCAACACC 7809 32 96.9 34 .G.............................. TTCAGCGCGGTGAGAACGTTGGCATCGCCCGTGA 7875 32 90.6 0 .G........C.A................... | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 99.1 34 GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Left flank : TGAGGGGAGGGAGGGGTGCTGGTGCTCGTCTGCTACGACGTGTCGACCGAGACCCTCGGCGGCAAGCGGCGGCTGCGCCGGGTGGCGAGGGCGTGCCAGGACCATGGCGTGCGCGTCCAGTTCTCGGTGTTCGAGTGCACGGTGGACCCGGCGCAGTGGACGGCGTTGCGGGCGCGGCTGATGGAGATCATCGACCCGAAGACCGACAGCCTGCGCTTCTACCTGCTGGGCTCCTCGGCCCGGCACAAGGTGGAGCACGTCGGCACCCGCCCGCCGACCGACCTGGACGAGCCGCTGATCCTGTGACGCGGTCCCCGCGCGGCGCGAACCCCAAGCGGCCATGATTTGCCGGGAGGGTTCGCGTGGGGAATATGTCCTGTCCCGATGGGCCATTTTTCGGGCTTGGGTCCGTTCAGCTTCGCATTTATCGGTTGCGACGCCGCAGGTTCTCGCGAACAGCGCCGTTCTCGCTGTACGCCCAAGCTCTTATACTCGGGGGG # Right flank : CGACGCCAGCGCCATTTCCACGGGAACGCAGGGCGAACAAATCGGCCGTTTCGTGTTGTCAGCCGTGTTCCCCGGACCAATTTGGAACGGATGCGAACGCTAGGAATTCCAACGGTTTCGTTGGTTCCATGCCGCAACGGGAGGGAACACATCTGGAGGGTGCCGGACCCCTTGGAAACCGAGAGTTTCCAAGGGGTCCGTATGGCTGGGGCGCCAGGATTCGAACCTGGGAATGGCGGTACCAAAAACCGCTGCCTTACCGCTTGGCGACGCCCCAATCCTGGGAAGGGTCGGGACCTTAACCGCAAATCCCGCGGCGTGCAACCCGCGGGAACGGCCTACCGCCCTTCGCGGCGCCACGCCACGATCATCGCCCCCAACGCCAGCAGCAGCACCATCGCCACCGGCAGCAGCGGCACATCCGACACCCCGGTCACCACGAAGTCGCCGTTGGCGCGCAGCCCGATCCAGCCGGAGCCGCTCTGCGCCCGGTCGGCCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGCGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 27442-26351 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGQZ01000147.1 Azospirillum sp. TSO22-1 Contig91, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 27441 32 100.0 34 ................................ ATCAAACAGGGAGTACACAGCTATGCTCTCCGTC 27375 32 100.0 36 ................................ GTGTTCGACACCCGCACGGCCGGCGTGTCGCTGACC 27307 32 100.0 34 ................................ AAGCCGACGTTCGGCTCCGGCGAGCCGTCGCCCT 27241 32 100.0 32 ................................ CCGCACGACGACACCCACAAGGCCGGGATGAA 27177 32 100.0 33 ................................ TCATACCACGCTGGATCTGTGCGTGAACTGGAG 27112 32 100.0 33 ................................ CGGGGAGGAGGGGAACACTGAACGATGGAGAGT 27047 32 100.0 35 ................................ TGGCTTACGGCGCGCAACTTCGCGCAGAAGTTCCC 26980 32 100.0 33 ................................ TCGGTTGGGTCGTATAGCGACACGGCTAGGTGG 26915 32 100.0 35 ................................ AGCTTCAGCAGCGTGTCCGGATCGGCCTTCGCCAC 26848 32 100.0 34 ................................ TCCGGCACTCAAGCGAACGACTTCCAGGGCCTGG 26782 32 100.0 36 ................................ CGTCCCCAAATCGGCGGCGTGGGAATTGCCTTCCTC 26714 32 100.0 33 ................................ GGCCGGCACCGGCGTGAAGGTCACCGTGACGCT 26649 32 90.6 36 ........TC......A............... TTCGCGAGGTAGCGCAGCGCCTCTGCGGCGATGACC 26581 32 93.8 34 ........TC...................... CACAAGATCGGCGCGCACGGCTGCGGCACGGCGC 26515 32 96.9 35 ................A............... GAGATCAACGACGCCGTGATGGTGGAGGAGGTCCA 26448 32 100.0 34 ................................ GCGCTGCTGACCCTGCGCGACCCGGCCAACGGGA 26382 32 93.8 0 .........C....A................. | ========== ====== ====== ====== ================================ ==================================== ================== 17 32 98.5 34 GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Left flank : TCCGTCGCATAGACGGCGCCGGCCGAGGCGTGGTCGACGCGCGCGGTCTTGCGCCCCTGCGCGGCGGCGCTCAGGTACTGCTGGAAGGCCTCGGCGTACTTTCCGGCGTCGTGCAGCAGGCCGAGGGCCCGCGCGAACGGTGCCGCCGACCCGCCGGGCAGAACCCCGGCCCCGAAAGCCCCGGCGCAGTCGGCGACCAGCCGGAGGTGACGGTCCAGCGGCTCCCATTCCGACGGCGGCCGTCCGTCAAGCGTGTGCGCGTACCAGGGCATGGAAGCCTCCCGCAACAGCGGCCCCCGATGCTAGCAGAGCCCCCATGGCGCGCGAACCCCAAGCGACCACGGAAACGCCGGGAGGTTCGCGCACCGGGCCGGGCGAGCCGCCAGAACGGCGGGACGGCCCGGCCCGGCGTCGGCTGCCACGAACGGCGCGAACATCACCCGAGGTTCGCGCAACCGCGCCGGTTTCCGACGGAGCGGCAATGACTTACACTGTAGCGC # Right flank : CGAGTGGTGCTGGCGGTCGGCACGGTTACCGATACGCGCAGATAGCTGACCGTGCGGCCGAAGGAGTCCTGGAGAGGCGCCATGGTGGTCGCTCTCCTTTTGGAGATAACCTTGCCCCCGCCCTCCCCCGCCCGCAGGCGGGGGAGGGCCGGAGGTGGCGCTACGCGCTCTTCGGCGGGCCGAAGGCGGTCACGGCCGGGGCCGCTTCGGCGTACTTCTCGAGCTGGGCGACGGCGGTGTGGCCGCAGTTGCCCTGGGCGAGCTTCGACGTCGGCACGTCCACGGTCAGCGCGTTGACGTCGCCGTACTTGCACAGCGTGCCCGGCTTGCCCGGCTCCGCCGGGTCGTACCAGCCGCCCTCGTTCACCCGGACGACGCCCGGGCGGATCGTGTCGGTCACCACCGCGCCGGCCAGGATCTGGCCGCGGTCGTTGAAGACGCGCACCACGTCGCCGGTCCTGATGCCGCGCGCCTCGGCGTCCTTGGGGTTGACGAGGCAG # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCTGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //