Array 1 378831-380268 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLL010000011.1 Bifidobacterium longum isolate Bifidobacterium_longum_BgEED06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 378831 33 97.0 34 ................................T ACGATGATGCGTTCGACGCTCATTGCTTCTCCTT 378898 33 97.0 35 ................................C GGTACTCGTAGACCTGTTGGCGTGACACTCCGGCG 378966 33 100.0 34 ................................. TCCCAGTGCAGGACGAAACCGACAAGCAGGGTAG 379033 33 97.0 33 ................................T TCCTCGATGCGCTCCAGACGTGCCGTCCGACTA 379099 33 100.0 33 ................................. AGCGAGCCGTCGCCAACAGCCATGACACCCAAC 379165 33 100.0 33 ................................. TCAACCTGAACAACCTCGCCACATTCCTCGCGA 379231 33 97.0 34 ................................C GCAACTGGCTGAGACGCGGCAGGGAACTCGGCCT 379298 33 97.0 34 ................................C ACAAGCTGCTCTCCTACCGCGCGTTGGACATGAC 379365 33 97.0 34 ................................G AACAGACGAACGAGAAGCAACGCCAACGCATGAA 379432 33 97.0 32 ................................C CCATACACTGACCGGGATGGTCTTTACGATGC 379497 33 97.0 34 ................................T ACGGTCATCCGCTTGAGGCGTGGCTTATCTGCGC 379564 33 97.0 34 ................................T CCGGCTATGTGGATCCGGCGTGGGCGCCCGGCAA 379631 33 100.0 35 ................................. GCGTCATCAAGGACACGTTCGAAAGCCTGTGCGCG 379699 33 97.0 36 ................................T GGGAAGGCAAGACCTGCGAGGAGATGGCCGGACTAC 379768 33 100.0 33 ................................. TGACGCAGCGCACCTGATGCCTTGATATCAGAT 379834 33 100.0 32 ................................. TGGCGTATGTGAAATCCTTATCCGATGATTAC 379899 33 100.0 34 ................................. GCGCGTTGAGGTCGGCGGTCGTCTGCTGGTAGTC 379966 33 100.0 34 ................................. TGGGGAGTCGGAAACATAAACACGTCAAACGTAG 380033 33 97.0 34 ................................G CCCAACAACTGGGTTCCAAGGCGATGGAAGCCGG 380100 33 97.0 34 ................................C ACTCCGCGTACGACACGGATCCGGCGGTCGACGA 380167 33 97.0 36 ................................C CATTAAGGCGGTGACGGTCGGAGACACGCCGTGCAA 380236 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 98.2 34 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : ACGCGGCGGATGGTCGGCACGGCCAGCAGGACGGCGGTCGCACCCTGTTTTTAGTCAAGTCGGTGTTTCGTGTTTCGTCACTAATTTTTTTCGGTTTTCGGCATGAGGAGTGCCGGCCGGTGGTTTGTTTTACTGGTTGTCCGTCTTGCCGAACATGAGGGCTTGGCTGACGCGTCGGCTGGGGCCGGTGAATTCGATGAGGCGTCCGTGGTGGACGATGCGGTCGATGATCGCGGCGGCGAGTTTGTCGTCGGCGAAGATCGTCCCCCATTTGCTGAACTCGATGTTCGTGGTGAAGATGATGCTGCGACGTTCGTAGCTGCCGGCGATGATCTGGTAGAGGAGACGGGCCCCGTCGAGGCGCACGGGCGCGTAGCCGAACTCGTCGAGGATGATCAGGTCGGCACGGGCGAGGTCCCTGAGCAGGCTGTCGAGGGCGCCGTCGCGTTTGGCCTTGCCGAGCTGGAGCACGAGCTCCGCGGTCTGCCGGAACCTCACGC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 382757-383319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLL010000011.1 Bifidobacterium longum isolate Bifidobacterium_longum_BgEED06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 382757 29 100.0 39 ............................. ACGCGGCGGATGGTCGGCACGGCCAGCAGGACGGCGGTC 382825 29 100.0 36 ............................. ATACAAGTCAGCCAACCGTCCCCAGTCGGCTTCGTC 382890 29 100.0 37 ............................. CTCAGCTTTTCTGGCGGCCTCCTCGTCGGCGGCCGTC 382956 29 100.0 39 ............................. CAAGCGTGCCGCCTTGGAACGGCAGGGATGGCATTGGTC 383024 29 100.0 38 ............................. GTAACGGAGCCGCGCCATAGCATAGGTCAGCGGCCGTC 383091 29 100.0 37 ............................. CACACGGTCTGGAAGAACGACGAGATCGCGTTCCGTT 383157 29 100.0 37 ............................. ATAAAAAATATGGCGCAACATGAATATGCATGTCGTC 383223 29 100.0 39 ............................. AACGACGAGATTCCCACGGATGCTGATTTCGAGAAGGTC 383291 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 9 29 100.0 38 GCACCCCACTGGGGTGCGTGGATTGAAAT # Left flank : CAGGAAACCGGCCTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATGCCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATTTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTTAAACCTCAACTTCCTATTGAACAAAAACA # Right flank : TAAGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTCGGTCTTCTCCCACGGGAACTCAACGTCCGTGCGGCCGAAGTGACCATACGCGGCGGTCTTCAGATAAATCGGACGTTTCAGATCCAGCTCGTCGATAATCGCAGCGGGGCGCAGGTCGAAGACCTTGCGCACGGCGGCGGCGATCTGGCCTCGCGTCACACCCTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGCGATCTGGATCTCGACTTTGTGAGCCAAGCCGGCAGCTACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCACCCCACTGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.60,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA //