Array 1 41475-45946 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIJL01000006.1 Shewanella algae strain 20-23R scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================== ================== 41475 28 100.0 32 ............................ TTGATGGAATCACCAATGGCATCCATTGCTTG 41535 28 100.0 32 ............................ TTTAGGGCCTCTGAGTTCTGTTGAGTGTTCAA 41595 28 100.0 32 ............................ TTAACCCTGCAGAATTATTACCACCTAATGAA 41655 28 100.0 32 ............................ TGGAAGGTCTTATTAACCCCGTCAATTGGGAA 41715 28 100.0 32 ............................ AAACTAAACGAGATGGGGCGTAAGTCAGGAGT 41775 28 100.0 32 ............................ ATACCAAGCCGAGGCTGTGGAGAACATAAAAG 41835 28 100.0 32 ............................ TGCTTAGCTTTTACAATGCCAAGAGCTATTTC 41895 28 100.0 32 ............................ TACATGAGTTCGCCCATCTTTACGCATCCTGA 41955 28 100.0 32 ............................ CTACATTGAGCGATGGGTCTATGATTGCCGTT 42015 28 100.0 32 ............................ TGTCTGGTGACCCACATACTCAACAGCACTAA 42075 28 100.0 32 ............................ ACTGCGCGACCTTAGTGACGAGCAAGCGTCTC 42135 28 100.0 32 ............................ ACCGTCCTGAGTCCTAACCCCCTGAGGGCAGG 42195 28 100.0 32 ............................ TGCAAGATGGCGCATCACTGCCGAAAGCTGAT 42255 28 100.0 32 ............................ TGTAATTCATGTTTTAATCCTGAGTCAGTAGA 42315 28 100.0 32 ............................ AAGTGTCTAAGTCTGTTGACACTGGTGGCCTG 42375 28 100.0 32 ............................ TTTCAGTGGGAGGTTGCGCAAAACTGTCTAAG 42435 28 100.0 32 ............................ TACCATTAATATTAGACACCCATAGATATTCA 42495 28 100.0 32 ............................ TTCATCGTCAAACGCGCCAGTTTCAACGATTC 42555 28 100.0 32 ............................ ATCATTCTGGAAAGTACCTGCATTCATAACGC 42615 28 100.0 32 ............................ TGGCTCGAATATTATTTCTTCGCTGGTCAAAA 42675 28 100.0 32 ............................ TCCAAGCCTATCCACCCACCATCATTCACTAA 42735 28 100.0 32 ............................ TTTCAGTGGGAGGTTGCGCAAAACTGTCTAAG 42795 28 100.0 32 ............................ AAACGAAAGTATCCCAAGGGGTAAGTGAAGGG 42855 28 100.0 32 ............................ ACCATAACCGCCACCAAATGCATACGCATCCT 42915 28 100.0 32 ............................ TGCTTGAGCAACTTTTGAAGCTCGGATGTTGC 42975 28 100.0 32 ............................ AGAATGAGGCTTCAATGCCTGAGCTGATGAAG 43035 28 100.0 32 ............................ AGGTGAATGAAAACGCATTCATCAAGTCACTG 43095 28 100.0 32 ............................ ACAGCCACCAAAAGGAACTGACAAATGAAATC 43155 28 100.0 32 ............................ ACGCAAAAGATATAGACCTATGGATTGATGAT 43215 28 100.0 32 ............................ AAAGCCCGAGGTGAACATGACAATAACTGAAA 43275 28 100.0 32 ............................ TGTTGTGTTGCATCTAGGTAAATCGTAAACAC 43335 28 100.0 32 ............................ AAGCGGATGCAGCATTTCTCGATTAATTTTCT 43395 28 100.0 32 ............................ ATAGTGCTAAGTTTGTTTAAGTAGGTCTTGAA 43455 28 100.0 32 ............................ AGCAGATGAAACGTTACCCAAGGTACCAGGCT 43515 28 100.0 32 ............................ TGCCATGTCGGCTCCTAATACCAGATTGTTAC 43575 28 100.0 32 ............................ GTATGCAAGAGCACGTGGACTTTATCAAGACT 43635 28 100.0 36 ............................ TTTTGGCATGTTGCTGCGAACGTATGCTAGCTAGCA 43699 28 100.0 32 ............................ ACTGGTGACGGCGAGCGTAAAAAGGCGATTTC 43759 28 100.0 32 ............................ AATTCAGAATTGGAAGACCTGAAAGCACAAGT 43819 28 100.0 32 ............................ AACATCGCCGGGTTAAGATGGCGTGACGCAGA 43879 28 100.0 32 ............................ TTTAAGGTCGGTGATAACGCTACTCTGAGGCC 43939 28 100.0 32 ............................ AATGCCACCCTCACCTGGGAGGGTGATAACGG 43999 28 100.0 32 ............................ ACGTCAGACACCCAGTAAAGCAGCGTCGAACC 44059 28 100.0 32 ............................ TTGCTCAAAGCTTGAGGCTAGCGCATGAATAT 44119 28 100.0 32 ............................ TATTGCGCGTTCAACACTGGCAATCTGGTGGA 44179 28 100.0 32 ............................ CGCTTTCTTGGATGCTTCCTGCTCGGCTTTCA 44239 28 100.0 32 ............................ ACCAAAGAAGCCGCCATTGCACACGCTAAGGC 44299 28 100.0 32 ............................ GCCTCCATTGCCCCAGATGCGCCCAATGCTAC 44359 28 100.0 32 ............................ AGTAGAGCACATTTACCTTGATGTCGAGCAGA 44419 28 100.0 32 ............................ AGAGCAAAAGAAGGAGCTTGGACTATGAAACA 44479 28 100.0 32 ............................ ACAACAACAAACAGCACAATCATAAACACTGA 44539 28 100.0 32 ............................ ACGACATAGATTCTGGGCCGAGCCGAAGGGGA 44599 28 100.0 32 ............................ TGATACCCAGCCACCATAAGATGATCCGCATC 44659 28 100.0 32 ............................ ACACTTAATCACTGCCCTGGTCACATGTCACC 44719 28 100.0 32 ............................ ACCAAGCAAGGGTAAGCCAAAAGAAATGCAAG 44779 28 100.0 32 ............................ ATGAGCGGACGGAAACAAGATTTTGCAGTTCA 44839 28 100.0 32 ............................ AGTTAGAAGGCACAGACGGGGCCGCCGACCTT 44899 28 100.0 32 ............................ GAGCTGAAAAACGAGTGTATTGCTGACGTTGA 44959 28 100.0 32 ............................ CTTAACTTGATTGGTTTATCACAGTCCACACA 45019 28 100.0 32 ............................ TTCCGTCAAAAACAGAACACATTTACTACGAT 45079 28 96.4 32 ....C....................... TTGTAGGCCTTGAAAGCAGATTTCTTTGAATC 45139 28 96.4 32 ....C....................... AGCAGATATACGATCTTCAACAACTTTCAAAA 45199 28 96.4 32 ....C....................... AAAGAACCGTGGAATGACTCATTCAATGAAGC 45259 28 96.4 32 ....C....................... CTACACTGTTGAGGCGTTAACCACGCCGTCCA 45319 28 96.4 32 ....C....................... ACATGGTTGAGAACGCCGAGTATTACATCACT 45379 28 96.4 32 ....C....................... CTCAGCCGCAGGCATATCCACAGGTTTCTTAA 45439 28 96.4 32 ....C....................... GTGAACGACTGGGGCCAGGTCACTGCATATAA 45499 28 100.0 32 ............................ AACTGAGGCCGTCAAACATCGTGGACATAGCT 45559 28 100.0 32 ............................ TCATGTGGACGATGATGACCCCATGGGTGAGG 45619 28 100.0 32 ............................ GAGTATGTTTATCCATGTAGCCGAAGCCCTGG 45679 28 100.0 32 ............................ AACCCAATGGTTTGGCGCAGCTGCGCCGCAGT 45739 28 100.0 32 ............................ TCGAAGTGAGTACGCTGACAGACCTTATGATT 45799 28 100.0 32 ............................ TACCGGGGTGTTGTCGGTGGCTGTGGTAGTGA 45859 28 100.0 32 ............................ ATTCAAGATGATATTGCTATTGCTGCCAGATA 45919 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================== ================== 75 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGTTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGTTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : AGTTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAGTATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTCGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCAGTGTAGCTGACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGTTCGAACAGGGCCGCCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //