Array 1 162121-164552 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVIX01000005.1 Akkermansia muciniphila strain BIOML-A1 scaffold5_size261156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 162121 31 100.0 34 ............................... TTTTAGTTTAACTTATTTTATTACCTTGTCAACT 162186 31 100.0 34 ............................... AACGTTTTTGGTAGTCACAATGTGGAATCCGTTG 162251 31 100.0 33 ............................... TATCTTGTTGTCAAATGTTTTTTGTTTTTGTAT 162315 31 100.0 34 ............................... ATCGCAAAAGTCACGATAGGAACCGCAATCGGAT 162380 31 100.0 33 ............................... CTATTGTTTAATGTTTAGTGTTTTATTGTTTGG 162444 31 100.0 33 ............................... CATGTCATGCCGTTTTCGTTGGTTTTCAGTGGA 162508 31 100.0 35 ............................... ATGATTTAGTTTCCTTTCTTTTAGGGGGTTATGCG 162574 31 100.0 34 ............................... AACATTGCGGATGAATAACTTATGATTGTGTCAT 162639 31 100.0 34 ............................... AGCGTCCAGAATATAGGCGTAGGCTTCAACATTT 162704 31 100.0 33 ............................... ATCCTACGGGAGACGTCGACACAATCATGGAGA 162768 31 100.0 34 ............................... AGGAATATGCTGACCTTAAATCCTTCTTCACCCG 162833 31 100.0 34 ............................... ATACACCGCCCATGTGAGAGTTTCTCCAGCGTTT 162898 31 100.0 34 ............................... CATCTTGTTGTTCATAATGTTTTCCTTTCTTTTA 162963 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAA 163028 31 100.0 34 ............................... AACGTAAGCGAAAAGGCCCGCCCCCTCGTAAAAG 163093 31 100.0 34 ............................... TGCGTCATCATCTACGTTAAAGGCCTTGCGGGCC 163158 31 100.0 33 ............................... AAGGCCAAAAGAAGCCAAAAGAATCCAAAGGAA 163222 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 163287 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 163352 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 163417 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 163482 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 163547 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 163612 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 163677 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 163742 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 163807 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 163872 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 163937 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 164002 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 164067 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 164132 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 164197 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 164262 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 164327 31 100.0 34 ............................... TTTTTAGCCGGCGCCGCAACAGGGGCGGCTTCCG 164392 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 164457 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 164522 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 38 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 26397-30917 **** Predicted by CRISPRDetect 2.4 *** >NZ_VVIX01000003.1 Akkermansia muciniphila strain BIOML-A1 scaffold3_size348836, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 26397 33 100.0 34 ................................. AGGAGAATTGTTGTAACTGCTTAATGGTTATACA 26464 33 100.0 34 ................................. ACCCGTAGGTAAAATAGACCAGACCGCCGTTACA 26531 33 100.0 34 ................................. GATATATTTGCATGGGACGTTGCCCCCGCCCTCG 26598 33 100.0 34 ................................. ATCCGCAATGTTAAAGGCTCTACGGGCGGCGTAG 26665 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 26732 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCTTCCCATGTGTGC 26799 33 100.0 34 ................................. CTTTCTTTTAGGGGGTTATGCGGGGGTGATTCCC 26866 33 100.0 34 ................................. AGAAGGGCCGGGGTTAAACCCGGCTGACTAGCTT 26933 33 100.0 34 ................................. CCATGTGTGCACCATGTCCAAATCCTCAAGGGCG 27000 33 100.0 34 ................................. TGAAACGTCATAGTTAACGCCCTGCCACATGTGC 27067 33 100.0 34 ................................. TCCATCTTGCAGTTTGATTTGAGTGATCATGATT 27134 33 100.0 34 ................................. AGTGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 27201 33 100.0 34 ................................. CCCGGTAGGTAAAATAGACCAGACCGCCGTTACA 27268 33 100.0 33 ................................. TGAGACGTCATAGTTAACGCCCTGCCACATGTG 27334 33 100.0 34 ................................. TTTAGTTAGTGGTTTTGTTGTCCGGGGGTTGCCC 27401 33 100.0 34 ................................. CGTCACCTATGGGGCGGGGTTGCCGTGTGATAAG 27468 33 100.0 34 ................................. CACACATGCACCATGTCCAAATCCTCAAGGGCGG 27535 33 100.0 34 ................................. TGGAACAAGGAATCCCTACTAAAATGGTAGGGAT 27602 33 100.0 34 ................................. CATGTCATGCCGTTTTCGTTGGTTTTAAGTGGAT 27669 33 100.0 34 ................................. TTGTTGGTGGTTTTAGTTTAACTGATTTTATTAT 27736 33 100.0 34 ................................. TCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 27803 33 100.0 34 ................................. TTCATAATGTTTCCTTTCTTGTTGGTGGTTTTAG 27870 33 100.0 33 ................................. CACATATGCACCATGTCCAAATCCTCAAGGGCG 27936 33 100.0 34 ................................. TCGCATGTTTGTGTAAGTCTCCTTGTGGCTCTTA 28003 33 100.0 34 ................................. CATATCAGGCCGTTTTCGTTGGTTTTCAGCGGAT 28070 33 100.0 34 ................................. ACCGCAAAAGTCACGATAGGAACCGCAATCGGAC 28137 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCTGGTGTAAGA 28205 33 100.0 34 ................................. CCCGGTGGGAAGGATTGCCCAGACCGCCGTGACA 28272 33 100.0 34 ................................. AACGGCCCCCGTAGGATAAATGACGGTGCTATAT 28339 33 100.0 35 ................................. TATGCGGACTGAGGTAGGCAGGCCGGTAGCATATA 28407 33 100.0 32 ................................. GCGTCCAGAATATAGGCGTAGGCTTCAACATT 28472 33 100.0 35 ................................. CCCGGTAGGCAAGATTGACCACACCGCCGTGACAC 28540 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 28606 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 28672 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 28739 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 28806 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 28873 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 28940 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 29007 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 29073 33 100.0 34 ................................. CCTTCCATTCACCCCGGATGACTATTTCCGAGGA 29140 33 100.0 34 ................................. CCTGGGATGTTGCCCCCGCCCTTGCGGATTTGGA 29207 33 100.0 34 ................................. ACCTTCTTGCAATTTGATTTGATTGTTCATTGTT 29274 33 100.0 34 ................................. CCCGGTCTCTTATATAGTGAGGGGAGTTCTTTTG 29341 33 100.0 34 ................................. AAGAAATTGAGGATTCAAACTACCGCCTTTGCGA 29408 33 100.0 34 ................................. TCCTGGGACGTTGCCCCCGCCCTTGCGGATTTGG 29475 33 100.0 34 ................................. CCCGGAGACCAAGGCATCCCATTTCCCTACATGT 29542 33 100.0 34 ................................. CGGTGTGGGAGATATACCGTTTCCGTTGCATAAC 29609 33 100.0 34 ................................. TGCCAGCTTGCGAACCTTTATGGAATTGAGATTG 29676 33 100.0 35 ................................. TCCTATCGAACGCACGTTGCCACCATTGACCGAGC 29744 33 100.0 34 ................................. CCGTGACAGGGCGGGGGCGTCATCATGCGGGTTC 29811 33 100.0 35 ................................. ATCTTCCACACGTGCCAAGTAACTGAGGGCATAGG 29879 33 100.0 33 ................................. CGGCACCGTTTTCGTAGACCGCCCATGTGAGAG 29945 33 100.0 34 ................................. ATCATCCGCAATGTTGAAGGCCTTGCGGGCCGCA 30012 33 100.0 35 ................................. CGTGGGATAGGGTGAATCGTGAATCCAAAGGAATC 30080 33 100.0 34 ................................. TTGCGGAAACAATAGACCGCCCTGTTGACCGCCC 30147 33 100.0 34 ................................. AATATCGTCCATTTGCCGGGTAGTGGTTTGTGAA 30214 33 100.0 34 ................................. ATCGTACATGGGCAAGCCATAATCGGAACAAAAA 30281 33 100.0 35 ................................. CCCGGTGCGGGTGATTTGCGTGTAGGCAACCGGCC 30349 33 100.0 34 ................................. AGCTTCAACGTTGAACGCGCGGCGGGCCGCATAT 30416 33 100.0 33 ................................. AATTTGATTTGATTATTCATTGTTTTATTTCTT 30482 33 100.0 34 ................................. TAATCCAGAAGTTAATGATATCACGGGGACGGGG 30549 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 30616 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 30683 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 30749 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 30816 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [30835] 30885 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 68 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //