Array 1 1645974-1643292 **** Predicted by CRISPRDetect 2.4 *** >NC_021826.1 Listeria monocytogenes, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1645973 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 1645907 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 1645841 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 1645775 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 1645709 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 1645643 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 1645577 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 1645511 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 1645445 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 1645379 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 1645313 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 1645247 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 1645181 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 1645114 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 1645048 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 1644982 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 1644916 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 1644850 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 1644784 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 1644718 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 1644652 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 1644586 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 1644520 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 1644454 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 1644388 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 1644322 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 1644256 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 1644190 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 1644124 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 1644058 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 1643992 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 1643926 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 1643860 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 1643794 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 1643728 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 1643662 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 1643596 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 1643529 36 100.0 31 .................................... TTGGGCAAAATGACCGTAATAAATCCATTCG 1643462 36 97.2 30 T................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 1643396 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 1643330 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [1643295,1643298,1643303] ========== ====== ====== ====== ==================================== =============================== ================== 41 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 2517049-2518378 **** Predicted by CRISPRDetect 2.4 *** >NC_021826.1 Listeria monocytogenes, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2517049 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 2517115 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 2517180 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 2517244 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 2517310 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [2517322] 2517378 29 100.0 37 ............................. CTTCCTACTTTTTGACATAAAAAAATAAGCCGAGTTG 2517444 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 2517509 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 2517575 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 2517639 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 2517704 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 2517769 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 2517834 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 2517897 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 2517960 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 2518026 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 2518089 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 2518154 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 2518220 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 2518285 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 2518349 29 93.1 0 .......................A....C | C [2518372] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //