Array 1 33-480 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHFF01000145.1 Acinetobacter seifertii strain MI421-133 147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33 28 100.0 32 ............................ ATATACTTTTATTTTGTGAGAATAGTGATTTA 93 28 100.0 32 ............................ ACTACCTGCGCGAACAGGAGTGGTTTCGGATT 153 28 100.0 32 ............................ AAGCACGTTCAATGGCCTTAACATCCGATTCA 213 28 100.0 32 ............................ AAAATTAATATTAAACGACTTATGAGCTTCAA 273 28 100.0 32 ............................ AGTACCAGTACCTGTGCCAGTATCAGTACCAG 333 28 100.0 32 ............................ ATTGATAGCCAAATAGCGCCACAACGCTTTAT 393 28 85.7 32 ...A..T.....G......G........ TCCACCTTGCAATTCGGCAAAATGTGGTTTTC 453 28 82.1 0 ....C......TC...........A..G | ========== ====== ====== ====== ============================ ================================ ================== 8 28 96.0 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : GTTTTTAAGAGTTTTGTTTTTACTTAGCTCTAG # Right flank : GAGTTCCTTTCAAAATTGAAGACGACGTATTTTGTCGTTAAAAGGCCGTATTAAGCTGATCAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTACTATATTTAAAATTTAACAATAAACTATGCACGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCAGTAGCCGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTGGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGGTCAAAGTAAGTAGCTTATTGGCAGGTGCAGCAGGGGACATGCATGATATTGGTAAGGCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 5110-6457 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHFF01000039.1 Acinetobacter seifertii strain MI421-133 40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5110 29 96.6 31 ............................G AGCAGTTATAAGCACATGATCTAACCGCTTC 5170 29 100.0 31 ............................. TTGACAGCGTAGTCTTTACCGTTCAAGACAA 5230 29 96.6 31 ............................A GAGAAACGAAATGCTGAATTACAGGCTAAAA 5290 29 100.0 31 ............................. TTTCAGAGAAATATAAATTATCAGTTATATG 5350 29 100.0 31 ............................. CATAAGCAAAATCGTAGCTTGAACCATCCAT 5410 29 100.0 31 ............................. GACTAAGCTTGTACTTTCTGATTCTTTGATT 5470 29 96.6 31 ............................A TAAGACACCTGAATTTAATGGCCCTTCAATA 5530 29 100.0 31 ............................. AAAAACCCGACGCATACCCCAAACCAGAGCA 5590 29 100.0 32 ............................. TACGAAACAGTAGCAAATCAGATTATTTCAGA 5651 29 89.7 31 ...G........A...............A GATGTGTCAGTACCAGCTACGAGAATGTCGC 5711 29 89.7 31 ...G........A...............G TAAATCGTAATTTGTGCAGTAGGAGCCATTA 5771 29 89.7 31 ...G........A...............C AAATCAGCACCGCAACAGTAAGCATGCCGAC 5831 29 93.1 29 ...G........A................ TGGACATCAAGAAAGTCCGTCTATCCACA 5889 29 79.3 31 ..CG........TC........G.....C TTCATTAAAGAAGTTCATATTTTTTAATTTT 5949 29 89.7 31 ...T........AC............... GCTTAATTATTCGGAGCATGTGAACCTCCAA 6009 29 89.7 31 ...G........A...............A GTTATCAATATAACGATATTCAAACTCACCC 6069 29 93.1 31 A..G......................... TACGATGCTACAACAGTTTTCACCATTACAG 6129 29 82.8 31 ...AG.......A.............G.C ACTTAAGAACCTATTTGGCGTTCGTTAAAAC 6189 29 89.7 31 ...G.......TA................ ATGCGCTAGAGAAGATTTCAGCAGGTTTTCC 6249 29 93.1 31 ...G.......T................. ATCATTGCGCGATAGAACGCATCAATTAATG 6309 29 86.2 31 ...G........CC..............C ACCAACCCGCTGTACCTGTATGCCCAACCGC 6369 29 82.8 31 ...A........CC.A............A CAGCTTTATTCGCAGCTTTGAGACCTGCATC 6429 29 79.3 0 ....G.......AC..........ATT.. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 92.1 31 GTTCCTCATCGCGTAGATGATTTAGAAAT # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGGGATGAAGGAAAAAATTCTCACGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGAATGGGAATTAGCTTTGCCCTACCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTTAAAGATGCTTTTGTTATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAACATCATACATTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : TTTAAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGTTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTACGGTCGGGTTCCTAAACCACAAGTATTCTAGGAAGCGGACAAACTGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTAAAATATGCAAATTTGATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCAGCGTCGAAGCCAATAACATCCCCATGAATGTCTGAACATCATAGCATAACTAAAATAAAATGCTGTGCAATTTATCAACAGTCTGCTACTGATGAACATATTTACA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCTCATCGCGTAGATGATTTAGAAAT # Alternate repeat : GTTGCTCATCGCATAGATGATTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //