Array 1 909846-911461 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH165054.1 Cutibacterium avidum ATCC 25577 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 909846 29 100.0 32 ............................. ACTCTCCATTCCCTCGTCACGTTGCTGAGCCA 909907 29 96.6 32 ............................T TGATGATAGTGCCAGCAACAGTTCTGATTCGT 909968 29 100.0 32 ............................. GTTGCATTCCTTAAGCCGCCAATAAGTGAAAT 910029 29 100.0 32 ............................. ACATGAAAAAGGGCCACTTGACTAGGCATAAC 910090 29 100.0 32 ............................. ACATGAAAAAGGGCCACTTGACTAGGCATAAC 910151 29 96.6 32 ............................T GTTCGGCGCAGTCCTCGAGTCCCGACGACTCG 910212 29 100.0 32 ............................. TCCGAGCCGCACTCAACCACGGCGCAAACCCG 910273 29 100.0 32 ............................. GCGCTCTCCTGTTCACCATCCTCGCCGGATTC 910334 29 96.6 32 ............................T TCACGCCGCGATCCCCGAGGCCCTGGTCGAGT 910395 29 100.0 32 ............................. AACGCCGAGGTCATTGGCCCGGTCGACTCCCT 910456 29 100.0 32 ............................. CTGAATGGAGAGCGAGCATGAGCACCACCCCT 910517 29 100.0 32 ............................. GTCGCGGCCTTCCTTGAACAGGGAGGTGTGCG 910578 29 96.6 32 ............................T TCGAGCGTGACCTCATCGCTGAACGAACCCGT 910639 29 96.6 32 ............................T CGCCCCGACCATGCGGGCGTGAGCAGCAGAGG 910700 29 96.6 32 ............................T CCTCCCCGGTGGGTGTCTGCCCAGATGCGGGA 910761 29 100.0 32 ............................. GGCGCTATCCGGTATATGCCTGATGAGGAGAT 910822 29 96.6 33 ............................C CGACTAGAGGGCGCATGGGGTATGACGATCCAC 910884 29 96.6 32 ............................T CAAACCCTTGTTGATCGGGATGTCGATAACCC 910945 29 96.6 32 ............................T TGCCCATCGTGAGCCACTGCTTTGTCCCCAAT 911006 29 100.0 32 ............................. GTGATATCTGGGTATGTGCCGCTGGCTAGGAC 911067 29 100.0 32 ............................. GCCACCGCCGCCCGCGTCATCGACACCGTCGG 911128 29 100.0 32 ............................. CGGGGCCAACCTGCGCTGGGCCAGGCTGGGCT 911189 29 100.0 32 ............................. GACTGATGACATGGCATCCCCAACAATTCACG 911250 29 100.0 32 ............................. CTGAACCACACACCTCCCTATTCAAGGAAGGC 911311 29 100.0 32 ............................. GCCGCCATACCAGCACCAGCAAGCCCACCAAC 911372 29 96.6 32 ............................T ACCCGTGAAAAGGCTGCGGTAATGCTGGGTCA 911433 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.7 32 GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Left flank : GACGCCCCCGGAGATCCCGATGACGGATACGGGTGGGATGTTGTCGACCTGTGGGACGACCGCACTGGCACGGTCGCCGGCGGAAGATCGTGGGCATAGCCATGGTCGTGCTCGTCCTCACCGCCTGTCCCGCGGGACTGCGTGGCCACCTCACGAGGTGGTTGCTCGAGATCAGCCCTGGGGTGTTCGTCGGGCATCTGCCTGCACGGATCAGGGATGCCCTGTGGAGCCGAGTCGTTGAAATGTGCCACGACGGGCGGGCGATCCTCGTGTACTCGATGCGCGGCGAGCAGCATTTCGAGTTCCGCGTGCATCGACATGACTGGGACGTCGTCGACTTCGACGGGCTGAAACTCATGCAGAGGCCAAACAATAGGGCACACAACTCGACACTGCGGCCGGGATGGAGCTCGGCTGCGCGGCGACGTAGGACGGCCAAGCGCTAGATCGAGTACACTTGTATCTGGGCAAAGCTCCTGCATCAACCGTAGTCGGCTGGT # Right flank : GGAGGTCAGCATGGCTGACCTTGTTATCCAGGCGTTGCAGTTGGCGACAGCGGTCGTCAACCTCGCAGCCGCCGTGATTGCGGTGCGCAAGCTCCGCAAAGAAAGCCGCCCCCGAGGTGCAACTCGGAGGCGGCGAGGTGGCAAACGCCGGTAAACAACGGGGACCCGGTTCCACAGAGGGGCCGGGTCCCCTCCTTCCACGAAGTATACCTGTCTGCGCGGGCCAGGAGAAGGGGTCGCCGGTACGCCGATGAAGCGCTTAGGTCTCACCACAAGGGCCGTTGATTGAGGTCGTCTTCCCCGCCTACGCGGGGGTGAGCCGGCATCACCGCCTCACAGACCCCCAGCGCGGCCGATGGACCGCAGCCGGAAGCGTCATCATCGACTGGCAAAACCGATCACTGGTCCCCATCGACGGAAACCTTGATGCCGTCATCGACCACTGGGCATGGACTCACGACCCCCAAGCCCACACATCCACCATGATCGACCTTGGCACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCTACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCCTATGCGGGGGTGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1473334-1473890 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH165054.1 Cutibacterium avidum ATCC 25577 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1473334 36 100.0 37 .................................... TGGTCCATAGTGCAAGGTCGAGTAGGGGGGAACGGTG 1473407 36 100.0 38 .................................... TTGCCGCCATGACGCCACTCGGCCCAGTGATTCCTCGA 1473481 36 100.0 39 .................................... CGGTGCACTCAGGTCCGCTCCACCGGCACCGGCGGGTCG 1473556 36 100.0 38 .................................... CCAGCGCCACGCCCATCCAGATGTTCAGGAACGGCATG 1473630 36 100.0 39 .................................... TGTTCGTGGGCGGGCTCCTCGGCGACGCGCTTGACTCCC 1473705 36 100.0 38 .................................... TCTCTCGTCCCTCCCCCCGGTGTGCGCAGCCACAGGGG 1473779 36 100.0 40 .................................... CTACGCCACACTCGCACGGTGTCGGCGCCGACAAACGGTG 1473855 36 94.4 0 .................................TC. | ========== ====== ====== ====== ==================================== ======================================== ================== 8 36 99.3 39 GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Left flank : ATCGCGGGGTGACGGTGAGATGAGTCGCCAACCTGACGAGATGGCATATCTCATTGCTTACGACATAGTGGATGATCGCCGTCGCGACATGGTTGCGAAGGTGCTTGGAGGTTATGGCAACCGTGTTCAGTACAGCGTTTTCATTGTGGTGTGTACCAAGGCTGCGCTTCTTCGGCTCCGCCGGAAGCTGACGGGGGTCATTGATTGTGAGGAGGACTCGATACTTGTAGCGCTGTTGGGGCCTGATGGAGGGGCGGACCTCTCAGTGGATTGGATAGGTCGGAGCCGAAGAGTGTTTGACGATGCTCCGGTCATCGTCTGATGCGAGAGGGTCTTGAAACACGGAATCATGTTGACCGCTCGCAGCTGCGAAGCTGGTTCTCAGAGACGGTTTGACCGAGATTTCTCGGTCTGGATCTTGATAACTACGTGTTCCTGGCGCGGGCCCCTCGCGAAGGGTTGATATTCTTCCTAATGAGAGGCGCTTGGATCGCCACGCT # Right flank : CTGGTCCGAGGTCGTTGAACCTTCCCGGTCGCCTCGATAACCCCCACCCGATCGACCCACCCAACCCCTTACACTTTCAGCGTGATATTTGTGGACCCCGCGAACACCAATCCGCATCCTGCCCGCACCCTCGTCATGGGTGTCGTCAACGTCACCCCCAACTCCTTCTCCGACGGAGGCATGTGGGCAGACCCCGAGGTGGCCATCCGCCACGCGCGTGACCTCGTCGCCCAAGGAGCCAACATCATCGACGTCGGCGGCGAGTCGACCCGACCGGGCACCGAACGCACCCCCGAGGACGAGGAACTGCGTCGCGTCATGCCCGTCGTCAAGGCCCTCGTGTCTGACGGGGTCACCGTATCCGTCGACACCATGCGTGCCTCCGTCGCCAAGGCGGTCGTCGAGGCCGGAGCGACGATCGTCAACGATGTTTCCGGGGGCAAGGCCGAACCGCAAGTCCTCAACGTTGTCGCCGATTCTGGCGTCGACTACGTCCTCAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGGCTTAACTGCCGAGGCAACTTCGTTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //