Array 1 76867-72155 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000020.1 Microscilla marina ATCC 23134 1099589004080, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================== ================== 76866 37 100.0 36 ..................................... TCAAAGCTCGATGTTTTTGTTGCTTCGGGCTTTGTT 76793 37 100.0 39 ..................................... ACGAACTATATGCCCACCACATATTTGGCACCACATTAA 76717 37 100.0 35 ..................................... TGTTTAAAAGTTGTGAATTGAATTATTTAATTAAC 76645 37 100.0 38 ..................................... CTCCTTCTCCACTAGTTCCCACTTATAGCCGGTGTTAT 76570 37 100.0 36 ..................................... TGTAATCTGCTAAGTCTTCATCGGGGGCGTAAGCCC 76497 37 100.0 36 ..................................... CTTGTCTAGAAAACTGGCACCTGATTTTTGATAATT 76424 37 100.0 37 ..................................... ACGAATTAGAATAATATGAAACATACTTATGACGAAG 76350 37 100.0 37 ..................................... GCGCGGGTGTTTTTCCTATACTTGAGTCTCCGACCAT 76276 37 100.0 36 ..................................... ACGGTGTGAACGTAACGCAAGCATATTCTTCATCTA 76203 37 100.0 35 ..................................... ATCAAAGTCTTGATATTTTGCTCAACCTATCCAGG 76131 37 100.0 36 ..................................... TTGACTATAGGTTTCTTGTTTGATCTTCTGTGTAAT 76058 37 100.0 36 ..................................... CGGGTGGTTTTTTAGGGTTGGGAGTGGATAAGGGGA 75985 37 100.0 36 ..................................... CAATGTTCTGCTTTGTAGCTAAGTCTTCAGTATTGT 75912 37 100.0 37 ..................................... ATTTCTTGATACTCTCGCTTGATTGCAGCGATGTACT 75838 37 100.0 36 ..................................... AGCAATCTTATTAGCATATCAGACACCAACAAATAC 75765 37 100.0 36 ..................................... CACTTAATAGGCAAATATTTCATAACTAACCTTGTA 75692 37 100.0 34 ..................................... ACTACCTTCTATGCACTATCACCCTTTATGACAT 75621 37 100.0 35 ..................................... TACTCCTCTTCGGTCTTTTTAGTTACCTTCTTGGG 75549 37 100.0 36 ..................................... TCTTCCATCTGTACCCTACGTTTATCAGCTTATCTC 75476 37 100.0 35 ..................................... AAAGGCGCTAAACTTGCATCACCCTTTGTTTGCAA 75404 37 100.0 35 ..................................... TTTCTAGCCTATGGTAATGTATAGGGCTTGCATAG 75332 37 100.0 36 ..................................... TAAAAAATTTGGAACGTGCTGAGGCGGTTAGCTCCT 75259 37 100.0 34 ..................................... AAACCCGATACGATTGTTTGGTGCCCGTTTGACG 75188 37 100.0 36 ..................................... TTTGTTTTAGCTCTTATGCCACCCATATTTGGCGAA 75115 35 94.6 36 ...................-...........-..... AGTGCGTGATGAATGTCAGCCCGTGTCTCGCCCGCC 75044 37 100.0 36 ..................................... CCCTCAAAAATAAGGAGGGCTTTTGGAATAAGGTCA 74971 37 100.0 38 ..................................... AGATTTTGGGATTCAGATCGTAAGATCGTAGGCGAAGC 74896 37 100.0 37 ..................................... TTTTTCATTTTCAAGGTCTTTTCTTAAAATAAGCGCT 74822 37 100.0 35 ..................................... AAAAACAAGGTTAAAGCAGTACAGAAATATGCCAA 74750 37 100.0 36 ..................................... TTAATATGAATTGTTTACAAATAATCAAATTGTTTA 74677 37 100.0 37 ..................................... AATAAAATGGGAGCACTGCGCAGAATTTTTAACGGCA 74603 37 100.0 40 ..................................... CCACATTCAAGTAGAAGCAGATTTTCAATGCTTTCATTTT 74526 37 100.0 36 ..................................... TTTCTATCAGACCTATCTTTGCTTGTCCTAAGCTCC 74453 37 100.0 35 ..................................... TAATTTCGTCCAGACGGATTCCCCAGCGTCGGATA 74381 37 100.0 36 ..................................... AAAAATAGAAAAGAACCAAAAAATTAGAGTTATGAC 74308 37 100.0 36 ..................................... GCATTTGTTTGTTCTTATTATAAGTATGAGGCATCA 74235 37 100.0 37 ..................................... CCGGAACGACCATCATTCCAGCATCGTAAAGTTTTTT 74161 37 100.0 36 ..................................... AACGCTAACTCTATATTAGTAATATCACACGAGTAG 74088 37 100.0 36 ..................................... CGCCTACTAGGATTTCCGCCAAAATACTATAAGACC 74015 37 100.0 36 ..................................... TGGGGGTTTGCTTTTTGAATCTCAGGTATTATGAGC 73942 37 100.0 36 ..................................... GAGTAATGAAAGTAATACTGAAGTTGAGCACAAGCC 73869 37 100.0 35 ..................................... AAACCATCACCTGATCAAATAAAAACAAGCATCAT 73797 37 100.0 36 ..................................... ATGTTAGTAATCTCTACTATGTCCGATGCCTCTAAC 73724 37 100.0 37 ..................................... TCCATTCCAAAATCCCGTTATTCGTTATCATTTTCAT 73650 37 100.0 36 ..................................... ACTCATCGCACTAGCCGTAGTGTGATGCAACAACAG 73577 37 100.0 52 ..................................... GTAGTAATGGGTTTCGATCGGTTGGTGAAGACACACAACCGAGGCGAGGGCG 73488 37 83.8 37 G.AAT...T.........C.................. GCCGCTATATTTTCAACGTGTCCGCCTGCCAATATTT 73414 37 100.0 37 ..................................... AATTCAATGACGCTGCTGCTTCTCTTATACGATTCTT 73340 37 97.3 52 .............T....................... GTAGTAATGGGTTTCGATCGGTTGGTGAAGACACACAACCGAGGCGAGGGCG 73251 37 83.8 37 G.AAT...T.........C.................. CCCCTTCGCTTATTTGAAACCTTTGCATTTTGTCGGT 73177 37 91.9 37 ..........T..T....C.................. CATTCAATGACGCTGCTGCTTCTCTTATACGATTCTT 73103 37 91.9 37 ..........T..T....C.................. ATCTCACGCTTCCCGCTTCAAGCAATGAATAATTGCT 73029 37 100.0 34 ..................................... TATATGTGCAAAGATAGAAAAAAACCTACAGAGG 72958 37 100.0 36 ..................................... GTAACCTCTATTGCGGTAAAGCCCCAATAAACCGAA 72885 37 100.0 37 ..................................... GTTTTGGCATGCTTACTTCTGCCACCTTTTTACCTCC 72811 37 100.0 35 ..................................... ATATAATAGATTCAGCTACAGCATTGTATGAACAA 72739 37 97.3 37 ..................................G.. TAGCTTTCTAAGATTTCTTCTCTTTGGATTTTAGACA 72665 37 100.0 52 ..................................... GTAGTAATGGGTTTCGATCGGTTGGTGAAGACACACAACCGAGGCGAGGGCG 72576 37 78.4 37 G.AAT...T.........C....GA............ CCCCTTCGCTTATTTGAAACCTTTGCATTTTGTCGGT 72502 37 91.9 37 ..........T..T....C.................. CATTCAATGACGCTGCTGCTTCTCTTATACGATTCTT 72428 37 91.9 52 ..........T..T....C.................. GTAGTAATGGGTTTCGATCGGTTGGTGAAGACACACAACCGAGGCGAGGGCG 72339 37 78.4 37 G.AAT...T.........C....GA............ GCCCTTCGCTTATTTGAAACCTTTGCATTTTGTCGGT 72265 37 91.9 37 ..........T..T....C.................. CATTCAATGACGCTGCTGCTTCTCTTATACGATTCTT 72191 37 89.2 0 ..........T..T....C.................T | ========== ====== ====== ====== ===================================== ==================================================== ================== 64 37 97.8 37 CTTTCAGAGCAACATCCATTAAAACAAGGATTGAAAC # Left flank : GCTTACCCATCATTTTTAAACAAATTGTTTTCCAAGGCATACTTTATCAACCCTTTGGTGGCATTCTCTACCCCCAGTTTTTCTATCAACTTGCGGCGATGGGTTTCTACGGTAGAGGGGGCAATAAAAAGTTTTTCGCTGATTTGGGGCGTCGTTCGCCCGTTTACAATCAAGCGCAGTACTTCTTTTTCCCGGCTGGTAAGCGATGCCTCAAGCAGAATAAAAATATTTTGGCAAAAGCTACCAAATCTAAAAAAAGATATGCAAATTGGGGTCAGTAAACCACCTGTTTTGATCGGGTGGTGCTTTTTCCGGAGGGCAATTTATTTGGGGTGGCGCCCAATACGCCTTTAATGCTTTATGAATGAGAGAGTTACCTATTCGGAAAACTTGCTAAAATAAGCATCAAAAGCTCTTTGACTTCTTGATTTTTTTCATTTTCAGCCTCTAGTAATTATGCCATAACTTGCTGATATTTAGCTCATAACAAAGAAAGACGA # Right flank : TCAAGTTTCCAGTTCTTATCACCAAGGGGCTGCTTAAGCATTGTCTAAACGGTAATTTCTACGTGATTGCCTTCCGGGTCGAGCACTACGCTTTCGTAGTATCCATCTCCTGTAGTACGAGGCGCTCCTATTACCTGATAACCATCGTTTTGTAGTTGTTGGGTAAGTTGATCTACTTTTGCTTTGCTCCCTACGCTGATCGCCAAATGAGCCAAGCCCAACTGGACTTGTTCTATTACTTGGGCAATGTCTGGTCGGTGCATGATTTCGAGTTGGCAACCACCCCTGCCAAAGGATAAAAAGTAGGAGGAAAACTTTTTCCTGGGGTTTACATATTTTTCGTTACTTATGGCATCGAAATAGGTGGTATAAAAACTGCGCATTTTTTCCAGGTTATTTACCCAAATGGCTATGTGTGCGATGTGCATAATAGTTTTGATTTAAGGGCTTCATCGGCTCATGTAGCACGTGACATTATTTGAAATAGAAAAAACCACTAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGAGCAACATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [37-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 40801-42824 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000018.1 Microscilla marina ATCC 23134 1099589004109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 40801 37 97.3 37 ..................C.................. GCCGGAATGTTTTTGTAGATGAGGCGAATGTTTCAGC 40875 37 97.3 35 ..................C.................. GAAGTTGAATTATCCAATGCAAAAACAGTAGTTGG 40947 37 97.3 37 ..................C.................. CTTTTAAGGGTCATACAACAACACCTGCTCCGGTTAT 41021 37 97.3 37 ..................C.................. TTTCTGCTCGATCTGCAAATGCCTCAAAGCTGGCTTT 41095 37 97.3 37 ..................C.................. AAGTAAGATGGGACCTGGTAGAGAAGTGGAGCTTTGA 41169 37 97.3 38 ..................C.................. TCTGATGGCACCTATTACCTACACACCCGCAAATACAA 41244 37 97.3 38 ..................C.................. CACGACTGTTAGCACTAAGTGCACTATTAAGATTGCGC 41319 37 100.0 38 ..................................... CGGGTGCCACTTTGACCTATCCACCTCATACCCTTATC 41394 37 100.0 36 ..................................... CCCTTACATCAGGATAAACTGATGAAAAACTGTAGG 41467 37 100.0 41 ..................................... AAAATCTCATTCCATTGAAACTCATTTTCTTTTTCAGCACC 41545 37 100.0 37 ..................................... AGGTTACTTAAGTTACCTATACTTTCTGGTAAAGTAG 41619 37 100.0 37 ..................................... ATTCTCCATTTGCTCTGGACAGATGACCAATTAAAAT 41693 37 100.0 35 ..................................... CAGGCAGATTCAGCGATTGTCTCGCCAAAAGACTT 41765 37 100.0 36 ..................................... CAGCTTCTATATGTCTGTTTCTCTTGTCTGCTATAG 41838 37 100.0 37 ..................................... TATCGAAGCTAACGTTGTGCCCGATTATAAACGACTT 41912 37 100.0 35 ..................................... TAAAGCAATCAATACGCCTTATTAATTCCTTTATG 41984 37 100.0 36 ..................................... CAGTCTACCTTCTACATATACTTGGTTCCCTTTCTT 42057 37 100.0 37 ..................................... CAGTATCAGAGAAAGGGTTAAATTCGAACACTTTACA 42131 37 100.0 36 ..................................... ATAAGTACATAACTGACAACGAAAAAGAGGCAAAAG 42204 37 100.0 36 ..................................... ACTTAACAAGAACAACTTCACCAACAAAAAGACTCT 42277 37 100.0 35 ..................................... TCGTCGTAATAAGTAGCGTGTGCGGGGTATTTATA 42349 37 100.0 35 ..................................... TTTGCACCTATAAACTGACGCTTAGGCATTGTTGC 42421 37 100.0 35 ..................................... CAGTTTGCCCGCCTAATGTTCTAGTGAACACCACA 42493 37 100.0 35 ..................................... TTTATATTTTCGTCGCTTCCCCATATCCTATTACT 42565 37 100.0 36 ..................................... ACTCCGAAAGCGCCTCTTCTGCTCTTTCCCCATACA 42638 37 100.0 39 ..................................... TTTCACTATTGACGACCCTAATCGCTTCCTTATAAATCT 42714 37 100.0 37 ..................................... AGATTAGTATTGAAATGGCACACCCTGAAAGCAGTAA 42788 37 97.3 0 ..................C.................. | ========== ====== ====== ====== ===================================== ========================================= ================== 28 37 99.2 37 CTTTAAGAGCTACTTCCATTAAAACAAGGATTGAAAC # Left flank : TTTGTACAGACGTTGTATGCTGACCGTCTTCTTGTCTTGCAACAGGCGCAAGTTGCGGGAGAGAGAGAAAGTACCAATAGTTGGGGTTGTCATCATGCTGAGTGAGTTGCGGCAAAATTCCAAAATAAACATTTTTTGGTGAAAGTACTTGCCCGTAATCAAATAGTTTTTGTGTACTGCTTTGCCTTTCAGAAAAAGTAGGTGAGGTGCTCCCTCATTGAATAAAAAAAATTGCACAATGCTACTAAATCTAAAAAAAGATGTGCATCTTGTACGCATCAAAGCGGATGCCTTCCCTCAACAAAAACCTTTGCCGGAGGGTAATTTATTTGGGATAGTCCCAAATACACCTTTAACAAGCTGACTATAAGTAGGTTACCTGTTCGGAAAACTTGCTAAAATGGGCTTAAAAAGCTCTTTGACTTATTGATTTTTTTGATTTTGGGCTATAGTAAATTTGCTATAACACATTGTAAATCAGTGAGAAACATCAAAAGACA # Right flank : CATGAGGGTAGGTATCTTTCCGCCGTCGCTTGTGTCTTCACAAGAGACCAGACTGTCTTTGGGCGCTTTTTTTTAGAGGCTCAATCAGCGAGTGGAGACACTCGCTGAGGCGGTGGCGGTATTTTTAGGGTGAATTTTCTACACTTGTTTGCTTAGCCTGACGGCTATGGTGTCTTTACCAACCGATCGAAACCCTAAAATAAGTTATTTTTTAGGTACCGATATGTATCGGCATCTAAGGATTTGTGGGTGGTTTGATTTAGCTGCGCAGAGCTCGTAAACTCGGTTGTGGAGACACAAATCAGGGCGAAAAATAGTAGGGTAGAGTAGGAATGGACAGCCCGCTTTAAGAGCTATTTCCACTAAAACAAGGGTTTAAACTCGTAATTTAGTCTGGAGTCCTTAGACCATAGTTTTTAGCCTCACTTGGCGAACATTCGTAATTGACTATATAGTGTTGTTAAGATGAGTTGGCCAATATGCACATTGACCAACTTATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGAGCTACTTCCATTAAAACAAGGATTGAAAC # Alternate repeat : CTTTAAGAGCTACTTCCACTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 196272-193963 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000010.1 Microscilla marina ATCC 23134 1099589004081, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 196271 37 100.0 37 ..................................... CAAGGGCTTCAACGTCGACTAATGCATCATGCGCCCC 196197 37 100.0 35 ..................................... ACTACGCGTTCTAATTTTTCAACGTCTCTTTTTCT 196125 37 100.0 35 ..................................... GAAACAGTTGGCGCGCAGCTTCCTCAAAATCTGCG 196053 37 100.0 36 ..................................... CGGCTATACAAAACGGGTCGGCATACTTTGAGACGT 195980 37 100.0 36 ..................................... CCGGGGGTTCCCCGGCTCTTTGGCTCCAACCATCGG 195907 37 100.0 37 ..................................... CCGTAACATCACCAATCGTTAAGTTTTTGAGTACTAA 195833 37 100.0 40 ..................................... ACGCAACAATATTACCTTTCTCCGTACATTACGCGTCCTC 195756 37 100.0 39 ..................................... AGACAAATGCGTATATCAATAGCCTACAAAGGTTATCAC 195680 37 100.0 36 ..................................... CTCTACGTACAGTCAAAGCACAAGGTCAAACTAATA 195607 37 100.0 36 ..................................... AAGTATGAACATTTGGTTCATCACATTAAGAATGAC 195534 37 100.0 35 ..................................... TCTGAAGCAATAGTTGCATCAGGCACCTATCGAGC 195462 37 100.0 35 ..................................... TGAATAACTCTGTTTGTTTCATACAAATTACGGGT 195390 37 100.0 33 ..................................... TTGCTCTGTTTAGCATAACATCTAGCAGATTGT 195320 37 100.0 36 ..................................... GGGTATGACGAATTTCAACGCGTGGCAAGCATAACA 195247 37 100.0 37 ..................................... GCTGCTACAGATGTTTATAATGAGCTTGACATGTCTA 195173 37 100.0 37 ..................................... CCCTTCAAATTGCTGTCCTACCGAACCGATCCGAAAA 195099 37 100.0 35 ..................................... AATACCTCTTTAAGTGCTTACAAAAAATGCATAGA 195027 37 100.0 37 ..................................... TTGAACCAAGCAGGCCTGGTCAAGTTCGATGAAAAAA 194953 37 100.0 37 ..................................... AGCTATAAAATAATGACCCTAGTTGCACGTAGAATCA 194879 37 100.0 36 ..................................... GGCGGGGGCGCGCTTGAAGACCTCGGAGGGCTTGAG 194806 37 100.0 36 ..................................... TTGGTAGGCTCAATGTAAAGGTGCAGTTTATCAGGG 194733 37 100.0 35 ..................................... AAATTATAGTTTGCATGTATCTGTGTCTTATAGTT 194661 37 100.0 37 ..................................... TAGAAAAACAGTATAATAAATTTCAAAAATAAATCTT 194587 37 100.0 38 ..................................... TTTTGTTCCAGTGTTTTCGAGTAAAATAAAGATACGAA 194512 37 100.0 37 ..................................... CTTCTGGTGGTAAAGTAGTTTTAGTGTTCTCCATCAC 194438 37 100.0 36 ..................................... CCCTGTAGTCCAGTACGTTATCATCTGAGTTCTGAA 194365 37 100.0 37 ..................................... TTGATTCTGCACAGGTTTATTATGGCAAAGCGATGAA 194291 37 100.0 37 ..................................... TTGATTCTGCACAGGTTTATTATGGCAAAGCGATGAA 194217 37 100.0 35 ..................................... ATTCCGATACCGTGGATCGATACCCCGATATAGTG 194145 37 100.0 36 ..................................... TATTTCAGTTTATTTTCATAAACTCTAGCAAAGCTA 194072 37 100.0 36 ..................................... TTATTGAGTTTTTGGATGAACTTTTTTTTGCCTGTA 193999 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 32 37 100.0 36 CTTTAAGAGCTACTTCCACTAAAACAAGGATTGAAAC # Left flank : AGTATTCGCTTGGTGCATTTCATTCTCTATTTCCCAATCAGTCAATTCCTCTTCAGTATCATCTTTAAACCTATACCTTGGGCAAAGACTTTACGTGGAGGTAACCGAGGGGTTTTTGGTGTATACGCGTTCACGCAATAAAGTAGTACCCGTAGAGATAAGCCCACAAGCCAAACAGCTGGTAAAAGCGGCGGTACAAGAAATGGTGGTGGTAACCAATGAAAATATTTTCCCAAAAGCTACCAAATCTAAAAAAAGATGTGCAACTTGTACCCATCGAAACGTGTGCCCTCAATAAGAAGAAAATCTTTGCCGGAGGGCAATTTATTTGAGGTTGTCTCAAATCCCCCTTTAACAAGCTGACTATAAGCAGGTTGCCTATTCGGAAAACTTGCCAAAATGGGCTTAAAAAGCACTTTGACGTATTGATTTTTTTGATTTTAACCTCTAGTGATTTCACTATAACTCACTGGTAATTAGTTGATAACAAAGAAAGACGA # Right flank : TCAATAAATTCATGGTAAAGCTCCACGTGGGAGGCTACTCTTACCACTTGCTGAGCACAAGTTTTTTGGTGAGCGCCCACCCACAAAGCACAAAACAAAAGGACGAGTTTCTTCATTATTTCAATTGTTAGGTTGGTAAGTAACTCCTTTAATTCTAATGGCTTCTTTAATGGCGTTTACATTATGCCTGTAAAAAAGCTTTGTCATCCAAGGTTATTATTCTATTCCTGTCTGTTCATTGTGCACTATTACCCAATGGTTGCCTTGCTTCATTAACCAACTTCTCATAAAGGAACCTTCCAGATAATAATCTACTACTGCACCATTTAGCCTAGTATTAAGTTGTATCTGATCAATCTTAGGTTGTGCAGTAATATCAGTTACCAAGCTAAGCGGCATATTTAACAGCTTACCCAGAAAGTCTCTTTTTTTGTAAGAAACCTCATCAGCCAAAAACTTATCAAATACTTTTTGGTATATTTCGTGAAAATATAAAGTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGAGCTACTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 223769-224909 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000008.1 Microscilla marina ATCC 23134 1099589004143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 223769 37 100.0 39 ..................................... CAAACACTCGCACAAAACACCTGGGAGCGAGCTAAGCAC 223845 37 100.0 36 ..................................... GTGAAGACGTGGTACTGTTTGTAAGTGGCATGGTTG 223918 37 100.0 35 ..................................... TACTTTGCTCTTCGTCTCTGTCTTTTGTCAGGAAT 223990 37 100.0 40 ..................................... TTGTTAATCAAATAATTCTCAAAATCGTGGAATCGTCCAA 224067 37 100.0 35 ..................................... GTATTGGGCAATGGCTGCTCTTGGGGTGGTTGAAC 224139 37 100.0 37 ..................................... ATGTCAAAACTGCACACACGAGTAACAACCAAGATCG 224213 37 100.0 36 ..................................... ACACTTTCGCAGGGTGGTGCAGCCTTAGCGACCAAT 224286 37 100.0 37 ..................................... TCTATTGTTCCCATTCTGCAAGAAACCACCGCTATCA 224360 37 100.0 36 ..................................... GTGCTCATAGCCTACTTGTTTACTCTATATTCCTCT 224433 37 100.0 37 ..................................... ATAAGCTGGCTCTAGATGGTATCGCAGGAGGTCTTTT 224507 37 100.0 35 ..................................... CCCAATTTTAACGGTAAGTAGAACGACCTATATTG 224579 37 100.0 37 ..................................... CCGACCAGGACGGGCAGGTGCAAAAAAAAACCACCTT 224653 37 100.0 38 ..................................... TTAGAAGTTGAAAATTGGAACGAAAAAGAGCCAATAAT 224728 37 100.0 35 ..................................... ATTTGCTTATACTATCAGGAAGGGTAGTTAGTTGA 224800 37 100.0 36 ..................................... TTTGCCCAATCCGCTTGCTGGATTGGATCATAAATT 224873 37 97.3 0 .............T....................... | ========== ====== ====== ====== ===================================== ======================================== ================== 16 37 99.8 37 CTTTAAGCGCTACATCCATTAAAACAAGGATTGAAAC # Left flank : CGAATCGTTACCAGGCAGGCTAACACCAGGGTGAGCCATAAGCCTTTGGTCTGCAAGGTTTTTATCTTCATAATGTATATTTATTGAATTTATAGGGTTGTTGTCTACTAAAAGTATAGTTGGTATAATTAACTGGAAGACAACTAAAATTAGGAAAAGGAGTAGTAAAATGCAGGTTTATAGGGAGTTTTCTTTTGAACGAGTGCGTTTGGGCAATGGGGAATAAAAATATTTCTATGAAGGTTACCAAATCTAAAAAAAGATGTGCAACTTGTGCCTGTGAGCGTATCTTGCGTAGCAAAAAAACGCTTGCCGGAGGGTAATTTATTTGGAGCTGTCCCAAATACGCCTTTAACAAGCTGATTATAAGTAGGTTGCCTATTCGGAAAACCTGCCAAAATAAGGCTTACAAAGCACTTTGACGTATTGATTTGTTGATTTTAACCTATAGTGATTTCACTATAACGTGTTGTAAATCAGTCAGCAACAACAAAAGACGA # Right flank : CAAGCTCTACTTTTTTCTACTCTGTCATTTGCATATTCTTTAAGCGCTACATCCATTAGGCTTGACGCCAGCATTATCTTTAAGCACTACATCCACTTAAAAATACTGTCACCGCCTCAGCGAGTGTCCTCACGCGCTGATCGAATCACCAAAATTTGGGCACTGAAATATATTAAAAATAGTATCCTGACGGCTATTAAAGGCACGTAACCTCCAAATCAAGCTCGGGGCAAGCGTAACGAAGGCGGTAATAAAACAAGGATTGAAAATTTGTGTATGAGCCCAAAAAACAACTTACTTTAGGGTTTCGATCAGTTGGTGAAGACACGCAACCGAGGCGAGGGCGGTATTATTTTTAGGGTGAAAGTTTGATTACCAGTCTTTAAGCGCTACATCCATTAAAACAAGGGTTGAACCCTCAACTCCCCCTCAACGCAAATTTAAAAGGCTCTTATAAAGAATTGGGCTGAAGGGTTATTGTATGCCCATTTTTGCTCTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGCGCTACATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 236658-238167 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000008.1 Microscilla marina ATCC 23134 1099589004143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================================================= ================== 236658 37 100.0 36 ..................................... ATTATTGTCATAGCATCAAAATAAAGAATACATGGA 236731 37 100.0 42 ..................................... AATAACTTCATTCAGAGTGCCAATGGCGTGAAACGTTGGCAG 236810 37 100.0 35 ..................................... TGTACCAGCCCGGCTCCTTTTTATGCTGGTCCAGA 236882 37 100.0 36 ..................................... CAAATACTTTGCTGAACAAACTTGACGGCATAGAAG 236955 37 100.0 36 ..................................... TTATTTCCTTAATTGTTCAAGAAAATCCTTGAGAAA 237028 37 100.0 37 ..................................... ACCATTTTCCGAGTGTTTACAGGGTTGCGGCAAACAA 237102 37 100.0 37 ..................................... ACCATTTTCCGAGTGTTTACAGGGTTGCGGCAAACAA 237176 37 100.0 36 ..................................... TTAAAAAAGTACTATTATATGGACTATCTAACATTA 237249 37 100.0 39 ..................................... AGGAATAACTCTCTTTGGTAGTAGGGCAATGCTATTTTA 237325 37 100.0 37 ..................................... GTTTATTCTTGAACTTTCTATTTTCATAGCGTTTTTT 237399 37 100.0 35 ..................................... CCATTTCGGCAAGCGTCCAGGTATCTAAGATGTTT 237471 37 100.0 38 ..................................... TTATATTAGGTAGAAGACATGGATAGAGACAAGTTTCA 237546 37 100.0 37 ..................................... GTTTATTCTTGAACTTTCTATTTTCATAGCGTTTTTT 237620 37 100.0 37 ..................................... TGAATATAATGACCATTGAGGCCCGCGAGCTTTTGCT 237694 37 100.0 36 ..................................... GGTTTCCCTTTCACAGAAATTGTGCAAGCTTCCGTT 237767 37 100.0 37 ..................................... CGCATTTCAGGGGACAGTTTCACCTTTCCAGCCTTCA 237841 37 100.0 71 ..................................... CTCACCCCGGCTTTGTCTACAAAGGCAAGTCCATACATTTCTATTTTCCCTCCAAGCTCCTTAATGATGGA 237949 37 100.0 71 ..................................... CTCACCCCGGCTTTGTCTACAAAGGCAAGTCCATACATTTCTATTTTCCCTCCAAGCTCCTTAATGATGGA 238057 37 100.0 37 ..................................... GTATTATCCCTTTTGTTTTTGAATTGTCCATATAATG 238131 37 70.3 0 ................T.C.CT.C.C..CT..T..CT | ========== ====== ====== ====== ===================================== ======================================================================= ================== 20 37 98.5 41 CTTTAAGCGCTACATCCATTAAAACAAGGATTGAAAC # Left flank : TCGACTACAAGTTTGCCGTATACGAGGGGCGGGTGTACCAAACCTACCTGCATCAGTTGTACTGTTATGCCTGGTTGATAGAAGACCATTTTGGGGTGGAAGTAACCGAGGGCTTTCTGGTATATACGCGTTCGCGCAATAAAGTGGTATCGGTAGAAATAAGCCCACAAGCCAAGCAAGTGGTCAGAGCAGCAGTACAAGAAATGGTGGCAGTGACCAATGAAAATATTTTTCCAAAAGCTACCAAATCTAAAAAAAGATGTGCAACTTGTACCTATCGAAACGTATGCCCTCAGTAGAACAACACTTTTGCCGGAGGGTAATTTATTTGGGGGTGTCCCAAATATGCCTTTAACAAGCTGAATATAAGCAGGTTGCCTATTCGGAAAACTTGCTAAAATGGGCTTAAAAAGCTCTTTGACGTATTGATTTTTTTGATTTTAACCTATAGTAATTTCACTATAACGTGTTGTAAATCAGCCAGCAACAACAAAAGACGA # Right flank : TTCGTTGAGCTCAGCACAGTAAAACTGTAGCTTCGGTTTTTCAAAAGTACCGTCATCGCCTCAGCTCGTGTCTCCACCATAGCCGTCAGGCTAAGAGGAGCATAGTAAAAAAAATCACTTAAAAATACCGTCACCGCCTCAGCGAGTGTCCCCACGCGCTGATCGAATCGCCAAAATTTGAATACTGAAAGATGTTTCATGAGGAAAAAAAATAGTAGCCTGACGGCTATGGTGTCTTCACGAGCTGATCAGAACTCTGAAAAACACTATTTACAGGCGCTACGACGAGGCGATTTAGCTTTGCTGAGCACCAACATTCATCGGTATCTAAGGACTCGTAAACTCGGTTGTGAAGACACCATAGCCGTCAGGTTAAGCAAACAAGTGTAGAAAATTCACCCCAAAAATACCGCCCAAAGACAGTCTGGTCTCTTGTGAAGACACAAGCGACGGCGGAAAAAAGAGGCTAGCCTGACGGCTATGGTGAAGACACAAACCGA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGCGCTACATCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 3904-1600 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000095.1 Microscilla marina ATCC 23134 1099589004106, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3903 37 100.0 37 ..................................... GCCTAAATTCCACCTTTAGCTTTCCTGTTTTCCGCCG 3829 37 100.0 37 ..................................... TGTTGCCATTTTTCAGGTTATATATGAAACCACCCCT 3755 37 100.0 34 ..................................... AACACAATGAAGCAAAAAGCAAGACATTGGCTAT 3684 37 100.0 35 ..................................... GTCTTGTAGCCAGTACTTAGGTCATGTCTTTCGTG 3612 37 100.0 34 ..................................... CGACTATTTTCTTATTACGTGGGACTTATGCCGT 3541 37 100.0 36 ..................................... CGTTTGGTTCAAAAACAAACCCTGAATAATTAATAT 3468 37 100.0 36 ..................................... TCTTTACCCATCACTTAATTTTAGTTTTTCTAAATA 3395 37 100.0 35 ..................................... GCAGCAAAGGAATGGTAAAGCTAATCAAAAAGCTC 3323 37 100.0 34 ..................................... TTAGCCACTTCCCCTGCTACGTCTAGCTGACTGA 3252 37 100.0 35 ..................................... CCGCTTCGGATTCGTTGGGTCGTACTCCAACGCTT 3180 37 100.0 36 ..................................... ACAGCTGGTACGCCGAACATAGCGGGTTCGCAACAA 3107 37 100.0 37 ..................................... AAATTAGATGTGTAAAGGGTATATAAACGCGCAAAAA 3033 37 100.0 36 ..................................... AACAAATGCGGGACGGTAGTTCGGCATCGACAATTT 2960 37 100.0 34 ..................................... ATATATAGGGCGTGTGACGATGTGAGTTGAAGGT 2889 37 100.0 37 ..................................... AGTTCCAGCCATATTATCACCTTTCTACGCATATTAT 2815 37 100.0 36 ..................................... AAGCAAGATTAACCTTGCAGCGATCGCGGACATTAC 2742 37 100.0 36 ..................................... TAGTACATGATTGCATCTACAAAAAAACCCTGTTTT 2669 37 100.0 39 ..................................... TGAGCTCAAGAAATCCTTGAAATACGAGTATTTCAACTT 2593 37 100.0 36 ..................................... CAAGTTTACTTGAAGCCGTAGAAAGCAGTTTTAAAG 2520 37 100.0 36 ..................................... GCCACTTTTTGTCTTGAAGTTAATTTTTCGTTTCTG 2447 37 100.0 36 ..................................... ATATTAAAGGTATATGCAACCGCGATTGTATATACG 2374 37 100.0 36 ..................................... ATATTAAAGGTATATGCAACCGCGATTGTATATACG 2301 37 97.3 38 .............................G....... TACTCGAATACTGTATCATTTTGCATAGCTAACGTGAT 2226 37 100.0 37 ..................................... AATATTGGACCCTGCTCTTGCGCAATAGATGAATCGA 2152 37 100.0 36 ..................................... TTAAAAGTATCAGACGTAAACAAGAGTGTAGGCTCT 2079 37 100.0 36 ..................................... GGCACGCTCTTGAGTGTGTTTCGACTCAAATTGATG 2006 37 100.0 38 ..................................... AAAGTTGAGATATGGGAGATTTTGGACTTTATCCCAAA 1931 37 100.0 37 ..................................... TGTTTTTGCTTGTAAGCGAGCACGAGACGCAAGCACT 1857 37 100.0 37 ..................................... TTTTCTTTGTTGGCATGTTCGGGTTTAGAATCTTAAT 1783 37 100.0 35 ..................................... ATTTTGTAACATTTGCAAGCTGCGCAATCGAAAGC 1711 37 100.0 38 ..................................... TGATGAGGTTCAAACTGAACAAATACAAAACCCCAGCG 1636 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 32 37 99.9 36 CTTTAAGAGCTACTTCCATTAAAACAAGGATTGAAAC # Left flank : TGGCTTATTTGATCCAAACTGCAGGCTACCTGCACGTAGCCATTGGCAGTGACCTGGAGGGTTTGATTCGCCCGCCAAAGGGTTTAAAAAAACTCATTCAGGTTAAAAAAATTGCCCGCGAAATGCAACGGCGGGGCTTTAGCCCAAAGGTGATTGAGGCGGTGATGTGGCGCAACGCCCTGCGGGTGTTGGGTGGGGGTGAACGTTGAGTCAATGATTTGATAAAATATTTCTGGAAAGGCTACCAAATGTAAAAAAAGATATGCAAATTGTGGGCGTCTATATGAGTGCTCCAGCACAGAAAAGTCTTTGCCGGAGGGTAATTTATTTCGGGTTGCCCCAAACACACCTTTAACAAGCTGACTATAAGCGAGTTACCTATTCGGAAAACTTACTAAAACAGGCTTAAAAAGCACTTTGACGTGTTGATTTTTTTGATTTTACCCTTGAGTAATTTTACTCTAACTCACTGGTAACTAGTTGATAACAAAGAAAGACGA # Right flank : GTAGTAATGGGTTTCGATCGGTTGGTGAAGACACCATAGCCGTCAGGTTAAGCAAACAAGTGTAGAAAATTCACCCTACCGCCACCACCTCAGCGAGTGTCTCCACTCGCTGATTGAGTCTCTAAAAAAAGCGTCCAAAGACAGTCTGGTCTCTTGTGAAGACACAAGCGACGGCGGAAAAAAGAGGCTAGCCTGACGGCTATGGTGAAGACACGCAACCGAGGCGAGGGCGGTAATAAAACAAGGATTGAAACGCTTTTGGGTTCTTTTGTATGCGCTACAACAAACCAACTTTAAGCGCTAAATACATTAAATCTTACTATTTTTCGCCCTGATTTGTGTCCTCACAACCGAGTTTACGAGTCCTTAGATGCCGATGAATATCGGTGCTCAGCGAAGCTAAATCAAACCACCCAAAACCCCAAAAAACTATTTATTTTGGGGTTTCGATCACCCCCGAATGGCGGGGTTTATCAATTGGTGAAGACACACAACCGAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAGAGCTACTTCCATTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 144903-145395 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000009.1 Microscilla marina ATCC 23134 1099589004145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 144903 30 100.0 37 .............................. TTTATAACGGGTCTTGTGCTGCTTTCCCTCCTTGCTG 144970 30 100.0 35 .............................. AAGGTGCTACCAACCAAGGAGCAGCCACCAGCCAC 145035 30 100.0 37 .............................. AGTGTGCACTCGAGTATGTTTCTGTACCCCCTGCAAA 145102 30 100.0 36 .............................. AACATTGCATCTCGTGTTCACCACTTACCACCAATT 145168 30 100.0 35 .............................. AAGGTGCTACCAACCAAGGAGCAGCCACCAGCCAC 145233 30 100.0 37 .............................. AGAGTTCTTAAAATGGCTTCCCCAGTTGCTATATCAG 145300 30 100.0 36 .............................. AAACCTGTTATATCCAAAACAAAAGCTATTAGCTTT 145366 30 90.0 0 .................C.........C.G | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 36 GGCTTAATCGGATCATTTAGAAATTGAAAT # Left flank : GGCCATATCACCCAGATTTTTCCAGGAACTGGTGATTTCCAGCGAGGTAAAGCTGTCTAACAGGTACTGCGCCCCACCAGCAGCAGGGGTAAATATGACTTGGGTGTTGAATGTGAGCATGGGGGCAACTTAGCAATGCCCAGGTGGTTTTGGGTAAGAGTTTTTTGGGGGATTGAGGTTTGAGGGGGTGAGGTGTTGTTTTCTTAAAGAATCAGTCGATATTTTAGCTGTATTGGCAACTTGAATGACCAACGACAACAAACAACATAATAACCACCCTATACACCTCAAAGTCTGAAATTTTGTGTATATTGAGAGCACAAAAGGTAGTATAATCAATTGACTTGTGAGTAAATCTCTGATAGCCAAACACTTGTAAGGTCTGAAACCCTCTAGAGCTTTTTACACTATGGGAGGTTTCAGACTTTACAAGGTTAAAAACTTTTGCCTCAACTTTGATTTGAGCCTGTAAATGCTCATTTTTATCCATTATTTCACGG # Right flank : GCAGTCGTCGTGTGTATAAAACTTTTTGGGTGTACTTAAGTATATCATTCAGTGCATCATCCTAAACGTTTTGATTTTACACCTTTCTTTAGCTACCATTTTACCTCTGTAATTTACCAACCCCTAAACAAATACCCCATACTCTTGCCAAATCCCACCTAGTTTGAAAGCAAAAATGTCCCATGAAAATCTATGAGTTTGCTCTCAAAATGCGGGACCTGGCAAGTTCCAAAGTGGAAAAGCTAAACAAGCTGGCTGGCAATACCAGGTCTAAGGTAGAACAGCTCGGAGCTCAGGCAAGCAAGGCAGCGGGCAAGTTTCAGCAACGCTTCCCGGCGGCAAGTCGTGCGGTAGCTGCTGTAGGCAATGCCGTCTCAAGGGTCACCCGTAAAATGGGCAAGCTTCGTCAGGTAGTGGCTTCGGGGGTGATGGCTGCCTTTAAAGGACTCAAAAAAGCCATGCTTGCTATAGGCGTGGCAGCTACCCTTGCCTTTGGGGTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTAATCGGATCATTTAGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 244222-243734 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000009.1 Microscilla marina ATCC 23134 1099589004145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 244221 30 100.0 36 .............................. TCTTCAGGTGACAAATGTTTTGAGATGAATCCATCA 244155 30 100.0 36 .............................. TAGGCCACAGGGTCACCCATCACGGTGAGAAACCCG 244089 30 100.0 35 .............................. ACAGTATCAAGTATCGGGCAGCGGCAACGCTCCGA 244024 30 100.0 36 .............................. GTAGGTGTTTTCGCCCAAAAGACAGCACCTCCTCCA 243958 30 100.0 37 .............................. GTAGTTATCCACATAGGGGTGAGAAGCAAATGTATAT 243891 30 93.3 32 .........A.................G.. TAGAGCCTTTTGTAACAAAGAGGTGACTGATA 243829 30 96.7 36 .............T................ TAAAATCTCCAGTACCTGGCTTGCCCTGATAGGTCC 243763 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 98.8 36 ATATTAATCGCACCATATAGGAATTGAAAT # Left flank : GATAGTAAGCCGGGGTGATGGCAATGGGGTAATACTTAAAATGGGTTGGAATGTAGAGGTGTTTGAAGCCTTTTTGACCGATGTGTTGGCGGGGAAGTATAAAGTAAAGGTGGTAGAGAAGGAGTGAGTTGCCCTAAAGCAAAAAAACTTGAAGGAAAGTAGATTAGCATCTACCCATCCCCCAAGATCCTTTAACCAGCTATGCGTTGCAAAGGTATGTTTCTTTTTGGTAATTTAAAATAACACTGCTGTTTTTTTTAACATTTTAATCAAGTAAAAACTTTTTAAAATTAACTGTTGCCAAGGGATTGGATATAGGGACATACAAAAAAGTTTTTTTTAAGAAGCAGCTTTATAGAAAAAATACAACACATCACCAAGTGTCGTCGCTCTTCAATGATACGATTAGAGACTGACGACATTTTTGCCCACTGTTACAGGTTTTTTTAAAAAAAATGTTATGTTTACCGTACAAACACGCACTTCTGCAAATTGAACGC # Right flank : ATATCCTGAACAACGCCTGCTGTAGTGTTGGGGAGAGTTTTTTTTGGAATAACATCCATCTGACTAAGTAGGGGTAGGTATTGGAGGTATGGCTACCTGGAAACTTTCTTGTTCGAATTGACTCACATCTGAGCCTACTAATCTCCAGGGTAGGGCGGAAACAACAAATCCGGCATGTTTATCAATTAAATAATCGATCAGGGTTCAAGCTAATTGAATATTTATTTAAGGTAAAAGTTAGAAAAAATCCTGAATGGGGGATATGTGTCAAATTATCTAAAGTTGACAATATTTCTCAAAAGTGAAGAGCCTCCTGGATTGCATCTGGTTACATTACAAATCAGGCAATACAAATATATATTATTGATCGCATTCCTGAAGCCACTTCACCGCATGAACTTTGGCCGCAATAGGCATGATATGCAAGCAACCACTGGGGAACAGTTTATTCAAACGGCGTGAGAATCCAAATTGATAAATTACGTTTTCAGGAAAAGTAA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTAATCGCACCATATAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 3 277589-278741 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000009.1 Microscilla marina ATCC 23134 1099589004145, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 277589 30 100.0 36 .............................. GAGCGGTAATGTTTCGGCGCCTGCCTCAAGCGATGT 277655 30 100.0 37 .............................. GCGAATGCCTTTTGGTCGCTCGTACTCGTTTGGCCAT 277722 30 100.0 36 .............................. AAAGGCATTTGCAATGTACAAAAACAAAAACCCGAT 277788 30 100.0 36 .............................. ACCAATTGCTATAATAAAAATATTGGAGCTGTATAA 277854 30 100.0 35 .............................. TAACTAAAACCACCGCCAGTACTAAAAATTTTTAT 277919 30 100.0 35 .............................. GGCTTTGATTACCTCATAAAAATTTATTACCTCTC 277984 30 100.0 36 .............................. ATGCTCTCAGGTAGGGCACTCAGGTTGTTTTTATTT 278050 30 100.0 36 .............................. TTGAACATTCGTTTAGCTTTTAGCTTATCTTCTTCA 278116 30 100.0 36 .............................. CTACAATAAAACCTTTATTATTCTATACAAACTGAT 278182 30 100.0 35 .............................. TTGTAATCTATTCGCTCTGTTATTTCTTTATCTGT 278247 30 100.0 35 .............................. CGGCCAATTTGATCGTGGCGGTTTTTTTGTTTCAG 278312 30 100.0 36 .............................. TTTTTTAGTACTTCTGTTGTTGTTTCCATACACAAA 278378 30 100.0 37 .............................. TGATTTCTTTCGATTTGCTTCCTTCCGGCAACGATTG 278445 30 100.0 37 .............................. CCTGTTGTTTTTCTCTTTTGCCTCTTTCATCTTTAAA 278512 30 100.0 36 .............................. AGAACTTAGGCAATTGTACATTAGCTTTAAAACTAA 278578 30 100.0 37 .............................. TCACTATAACACAACGAACCCCTATTTTAATACAAGA 278645 30 100.0 36 .............................. ACCATCCTACCTGCTCAGGAGCAACCCACCAGCTAT 278711 30 96.7 0 .............................C | T [278738] ========== ====== ====== ====== ============================== ===================================== ================== 18 30 99.8 36 GGCTTAATCGGATCATTCAGAAATTGAAAT # Left flank : TATCGCCCAGGTTTTTCCACGAACTGGTGATTTCCAGCGAGGTAAAACTGTCGAGTAGATACTCCACCCCACCAGTGACCGGGGTAAATATGACTTGGGTATTGAATGTGAGCATGGGGGGCAATTTAGTACTGGTTGGGTGTTTTTAGGTAAGCGTTTTTTGAGGATTGAGGTTTGAATGGGTTATTTTGTGGTTTTCATAAAGAGCCATTCAATACTTTAGTTGTGATGATAAATTGAATGACCAACTATACCAAAAGATATCACATCCTATGCATCCAACCCATCTTAAAGTCTGAAACCTTATGCATATTGATGGCTTAAAAGGTAGTGCAATCTATTAACAGTATTCAATATTCTGATAGTCAGCTACTTGCAAGGTCTGTAACCCTCTAGAGCTTTTTACACTATTGTAGGTTACAGACTTTACAAGGTTAAAAACTCTTGCCTCAACTTTGATTTGAGCTTGTAAATGCCCATTTTTAGCCATTACTTCACGG # Right flank : CAGTCAGGTGCATAAAACTTTCTGAATATATTTAACCCTATCATTCAAAACACCAACCTAAATACTTTTGATTTTAATCCTTGTCTTTAGCTACTATTTTACCTTTGTAATTAACTAAAGCCTAAATAAAGACTTTATACTATCCTCAAATCCCACCTAGCTTGAGAGCAAAAACATCTCATGAAAATCTACGAGTTTGCCCTCAAAATGCGGGACCTGGCAAGTTCCAAAGTTGATAAATTAAACAAGCTTGCCGGAAAAGCCAGGTCTAAGGTAGAGCAACTGGGTGCACAAGCAAGCAAAGCAGCGGGCAAGTTTCAGGAGCGTTTCCCGGTGGCAAGCCGTGCGGTAGCTGCCGTGGGCAACGCCATTTCAAGGGTCATCCGCAAAATGGGCAAGCTTCGTGGGGTCGTAGTTTCGGGAGTGAGCACTGCCTTCAAAGGACTCAAAAAGACCTTGCTTGCCATGGGGGCAGCCGCCACCCTTGCCTTTGGAGTGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTTAATCGGATCATTCAGAAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 59222-57599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000046.1 Microscilla marina ATCC 23134 1099589004083, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 59221 29 96.6 37 ........C.................... CGACTATTACACTGGAGTATTAGATGATGCAAGAAAC 59155 29 96.6 39 ........C.................... CGAATTTAGATTAATACGAATGTACCAAATCATAAAAGG 59087 29 96.6 38 ........C.................... CCTACCAAAACATAACTCCCTGTAAATCAAGCGTTTAC 59020 29 96.6 38 ........C.................... CGAGAATTGGGATAAGTAGTTCAATACAAGCGTAAAAA 58953 29 96.6 38 ........C.................... CTCTTATGTTTGCTACTAAAGATTGATACCTCTCAGGG 58886 29 96.6 37 ........C.................... CATATATCAGCAATATCTTGTTGCTTTACCTTTCGTT 58820 29 96.6 37 ........C.................... TTGATTAGGTTTGGCCCAGGGGTGATAAGCATCGTAT 58754 29 100.0 36 ............................. TTTGTAGTAATGTAGTAAGGTGTTTTATAGATTTCT 58689 29 100.0 37 ............................. TTAAACTGGCGCTGAGGTTGAGGTTTAATTCCTAAAT 58623 29 100.0 38 ............................. TGGTATCATGGATTTCCAGTGCTCTTTTTTTGAATTGC 58556 29 100.0 37 ............................. TTTAATCAAGAGGGAGATGCATATACCTGTTGTAAAA 58490 29 100.0 37 ............................. TCCTTTTTTATGGTGATGGTTGGGAAAACAAGTGTAA 58424 29 100.0 36 ............................. TCCTTTTAGGGCATATACATCTATATCTTCAGTAAT 58359 29 100.0 38 ............................. TGGTAGTAAGCTTGGACTGGTAGATTTACTTTGCCCTC 58292 29 100.0 39 ............................. TCAGGAAAGCGTATAGAGTTTTTCACCAAAGCGGCTACT 58224 29 100.0 38 ............................. TGCGCACACTACTTATTACGACGATAAAGAAGAAGTAA 58157 29 100.0 37 ............................. TTGGTCTGTAGTGGCCTGTTTACATCGGCACTGGTAA 58091 29 100.0 37 ............................. TATGAGTAGTAGGTGTTAGTTGCCGTGTTGGTGTTTT 58025 29 100.0 39 ............................. TAGGGTGGATGTTGTGAAATTCCACCACCGCCACCACCT 57957 29 100.0 37 ............................. TTTTTAACCGAGTCTGATCAGCATATTGACAGTTTCC 57891 29 96.6 36 ........C.................... TGCTGCTACATTTGCATCATCAGCCGTGCTGACTAC 57826 29 96.6 37 ........C.................... TGTGAAACAACTGCGGTACAAACAAAGCAGGGAATCA 57760 29 96.6 38 ........C.................... TCACCCTGCGACTTACTTTTTCGTTTGTGCCAATGATA 57693 29 100.0 37 ............................. CAGGTCTACCAAATCCTCAAACAGAAGCACAACCTTT 57627 29 86.2 0 .................C.A...GC.... | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 98.1 37 ACCTTAATAGCACCATATAGGATTTGAAA # Left flank : ATAAGTGAAGTAAAGCTCAAGGAATTATTGCTGGAGGCTGATCAGTTTATTGACAAAGCTTATGACAGCATCATTGTGTTTAAGAGCAGAGAGCAAAAGTGGTTGGACAAACAAATCGTTGGGCAAGAAAAGAATGATTTGGATAATTTTATTTAAATTGGGGTACTTAAAGGTTGCCTGATAACGATGTGTATCGTTTGCCAAAAGTTCTTTGACATCTTGAAAAATATTGATACAAAACCCTACAGTAGCAGGCGGCTAAAAACCGGAGTTTAGAGCACCTGAGAGGGGGTATTGTCGTCGGTCTCAGAAAAAATACAGGCGAAACTGGTGTGAAAAAACTTCTTTACTTACAACTAACTGACTATAAGCGCATTACAATGTCGTCAGTCTCCAGGGCAAATCGTATTACTGGAGACCGACGACATTTTTTTAAATATTGAGCTCTAGAAGCTACGCACATACGTTGTATGGCATATTTTTTTTACTAAATTTAACGG # Right flank : ACAGGTTCAATTTCTGTACATCCGTCAATAATCTGGCTCCACAAAAATGTGGGTGTTATTGACTGGGCGATTGTCAGGTAGTACAGACTAAACCACTGCTAAAGCACAAACCCCCTTGATGTTTATGTATCAAGAGGGTTTATTGTAAATATAAAATAAAGATTGAGTAAAATTTAAAAACAAAATAGCAAGTGATGATCGTTGTATTATTTAATATAAAAGTCAAATAATTACATTTAGTTATACAATACTCACATCTCCTACCGTCATTTGCTGAAGACAAAGCCACTCCCAGGCTTGAGGGTGATCATCGAAGTAAGCTACATTGAACGACTTTTTAATCTGTTTTTTTATTTCGTCCATCGTTTGTTGAGTAGACAATTGCGCCACATAAGAAGGGGGATTAGTCAGCGCAAAGTACGAAGTACCATACTCGAACTGATGAGGAGCTATTTCGGTACTTATCCAGCACTGTAGCTCTGGCCGGATAATGAAATCGC # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTTAATAGCACCATATAGGATTTGAAA # Alternate repeat : ACCTTAATCGCACCATATAGGATTTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 55431-54742 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWS01000045.1 Microscilla marina ATCC 23134 1099589004171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 55430 30 100.0 35 .............................. TTGACAAGGTTTGATTTTTCGCGGGCAAGTGCCTT 55365 30 100.0 35 .............................. ATCGAGGGGGTTTGAGGGGTTTCATTCATTGTTTT 55300 30 93.3 36 ...CA......................... CCACTACTATAATGCTTGGAGTTATTTGCGGCTTCT 55234 30 100.0 36 .............................. CAGAGCGAATGGAGGGGTCACCTGACAGGCTCGATT 55168 30 100.0 35 .............................. ACAGTATCAAGTATTGGGCAGCGGCAACGCCCCGG 55103 30 100.0 36 .............................. TGTATAGGTATATACAAAACTGCCTTGACATCAAAC 55037 30 100.0 35 .............................. GAGTCTGTAGCGGAGCACAGCCCTGCCACATCACC 54972 30 100.0 36 .............................. AGCTTGCTTGAACAACTTTTCCGTCTACAGTAGTAA 54906 30 93.3 37 ...............CT............. CTTTGGCACAACGTATTCTCGCTCGTTCTGGTGACCA 54839 30 93.3 38 ..........T.....G............. TAGGCCTTGAAGTACACGACCACCTCCCAGCCACGCGC 54771 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 98.2 36 ATATTAATCGCACCATATAGGAATTGAAAT # Left flank : AAGTACTTACCGGTTTATTACTGCTTGTTTTTATAATTAAAAACAGCTTTATTTATAAGGTAAAAGATTTGAAGATATGGAGGGGTTTAAGGGCTAAGGGTAAGGTAAAGGACAAGGAGTGAGCAGTTAGTTGCCCTAAAGCAAAAAAACTTGAAGGAAAGTAGATTAGCATCTACCCATCCCCCAAGATCCTTTAACCAGCTATGCGTTGCAAAGGTACGCTTTTTTTGGTAAAAAAAAATAACACTGCCGTTTTTTTTAACATTTTAATCAAGTAAAAACTTTTTAAAATTAACTGTTGCCAAGGGATTGGATATAGGGACATACAAAAAAGGTTTTTTTTAAGAAGTGGCTTTATAGAAAAAATACAACACATCACCAAGTGTCGTCGCTCTTCAATGATACGATTAGAGACTGACGACATTTTTGCCCACTGTTACAGGTTTTTTTAAAAAAAATGTTATGTTTACCGTACAAACACGCACTCCTGCAAATTGAAC # Right flank : ATATCTTGAACAACGCCTGCTGTAGTGTTGGTGAGAGTTCTTTTTTTGGAATAACATCCATCTGACTAAGTAGGGGTAGGTATTGGAGGTATGGCTACCTGGAAACTTTCTTGTTCGAATTGACTCACATCTGAGCCTACTAACCTCCAGGGCAGGGCAGAAACAACAAATCCGGCAGGTTTATCAATTAAATAATCGATCAGGGTTCAAGCTAATTGAATATTTATTTAAGGTAAAAGTTAGAAAAAATCCTGAATGGGGGATGTGTATCAAATTATCTAACATTGACAATATTTCTCAAAAGTGAAGAGCTCCCTGGATTGCATCTGGTTACATTGCAAATCAGGCAATACATACTATTGATCACATTCCTGAAGCCACTTCACCGCATGAACTTTGGCCGCAATAGGCATGATATGCAAGCAACCACTGGGGAACAGTTTATTCAAACGGCGTGAGAATCCAAATTGATAAATTACGTTTTCAGGAAAGGTAAAGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATATTAATCGCACCATATAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //