Array 1 24722-23367 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBK01000002.1 Streptococcus mutans strain UAB-36 NODE_2_length_356501_cov_293.108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24721 36 100.0 30 .................................... GAAGATGTGCTCAGAGAGCAAGAAAGGATA 24655 36 100.0 30 .................................... TTATGTTAGAAATCGGTAACAAATTACTTA 24589 36 100.0 30 .................................... CATTTTTTGGTTATGACTCTTACGGTTTGA 24523 36 100.0 30 .................................... AAAGGCTCTAACGCAGTTGACGCGCCCCTT 24457 36 100.0 30 .................................... TGATTATCAAAAGTCAGGCCTCGCTACTCT 24391 36 100.0 30 .................................... TGCGTATAATGCGTATGTTAAATCAGATGC 24325 36 100.0 30 .................................... ATAAATATATACAAAGCCTTCACCATATAG 24259 36 100.0 30 .................................... TCTGTACTCTCCATCCTTTGGGCCTTCTAT 24193 36 100.0 29 .................................... GAATGGAGATGTCTTATATGTTGGTTCAT 24128 36 100.0 30 .................................... TCCATGGAGCGTTGACTTCACTTAAAACTT 24062 36 100.0 30 .................................... ATTCTGGCCATAAATCACTGCATGCTATTG 23996 36 100.0 30 .................................... TAAAATCCAAAACTTACGTCCTTTCCATTT 23930 36 100.0 30 .................................... TATATTCCATTTCCATGAAATTTCCAATCT 23864 36 100.0 30 .................................... CTCACTTCTATGTTGCATATGCAGATGATG 23798 36 100.0 30 .................................... CAAGTGTTTTTTTAAGTTTTTAGCAAAATA 23732 36 100.0 30 .................................... CGTTCTTCGGTTATGACTCTTACGGTCTGA 23666 36 100.0 30 .................................... AATTCCTTTGATTACTTTCGAGGCAATGAA 23600 36 100.0 30 .................................... AAAATCAGACGCAGAGTCACGCAGACAATC 23534 36 100.0 30 .................................... TTCGACAACAAGCAAAGACACGAGTTGTTT 23468 36 100.0 30 .................................... ATAAAAGTCGATCAAAACGTCTATCTTTAA 23402 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG # Right flank : AAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21218-22045 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYBK01000008.1 Streptococcus mutans strain UAB-36 NODE_8_length_23460_cov_301.11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 21218 32 100.0 35 ................................ CAAACACACCAGCCTCATGAAATCGAGATGCCCGT 21285 32 100.0 35 ................................ CCATTTAATATCGCGTCCATTTTCATTGCGCCAAC 21352 32 100.0 33 ................................ TGCATGATAAAAGCAATGAAAAGAAATATAAAG 21417 32 100.0 34 ................................ ATCAATCTGTTGTTTAATTTCACTCATTTTAATA 21483 32 100.0 35 ................................ ACTGAATAGTTCAGAAGCCAATTCTGTCGTGACTA 21550 32 100.0 34 ................................ TTTAACCTCACATAAACATAAACAATCACCAACT 21616 32 100.0 35 ................................ ATAAATTGGATATAATTGAATTCCTTGAAATTGTC 21683 32 100.0 34 ................................ TTCTGACTAGTTGTATAATTATCAAAAAAGAGCT 21749 32 100.0 33 ................................ ACGCGGGTTCCGGGCTTTTTTAAAAGAGACCGG 21814 32 100.0 36 ................................ AAAACGATATTGGAACAACAATTACGACTCCAACAG 21882 32 100.0 34 ................................ TTGGATGATCCGTAATGAAAAAGGAAATGAGAGA 21948 32 100.0 34 ................................ TAGAGGAGAAGCAGAAAAATACGTCCAAGAATAC 22014 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 13 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGCTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTCAGCAGGTGGGTGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGAAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //