Array 1 1250751-1249258 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOY01000031.1 Pantoea sp. BAV 3049 NODE_125_length_5173969_cov_38.362724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1250750 29 100.0 32 ............................. ATAGTCGGTGTTTCCAGGCTGCTTAACGTTCC 1250689 29 96.6 32 ............................A GTCTGCCGGATACGGAAAATCCGTCATCACCC 1250628 29 100.0 32 ............................. TATGGATTCAGTTTCTTAAAGAGGAAAAACAA 1250567 29 100.0 32 ............................. AAAACCGCTATGACGACAACTGGCAGGCTGAA 1250506 29 100.0 32 ............................. TGATCAACAGTAAGCCGAAAGGCGGGAGATGT 1250445 29 100.0 32 ............................. CGTCACGATGATGTGGCGGCAATACAGCTAAG 1250384 29 100.0 32 ............................. GGATTACCTCGCCGTATACGCGCTCCATCGCT 1250323 29 100.0 32 ............................. TATTCAGCTTGTTTTAGCTTATGTAAAAACAG 1250262 29 100.0 32 ............................. GGAAGCGTAAACGCCGTCACCTTCACCCGGTC 1250201 29 100.0 32 ............................. CACGCGCTGGATACCAGCGTCAGCACCCGTAC 1250140 29 100.0 32 ............................. TTTTTTTTAAAAATTAATGTTATGAACACCAT 1250079 29 100.0 32 ............................. GGGGGCTTGCTATGTGTGGAGGCGGAGGAAAA 1250018 29 100.0 32 ............................. AACCGGGTATCAGCTGGAAAAGCTGGATTAGC 1249957 29 100.0 32 ............................. GAGAGTTTGAGCTGCTGCAGCTTCTCGCTGGC 1249896 29 100.0 32 ............................. CCATTGACGTTGCTACCAGTCTTCATATGCAG 1249835 29 96.6 32 ........................C.... ACCTATAACCGTATATGCCGCTTCGCTCAGGG 1249774 29 100.0 32 ............................. CAGAGATTTCAGCGGTGAATTGATGTCGCTGC 1249713 29 100.0 32 ............................. AATGCACCCAGTGCCACTACGTGAAGCCAGTC 1249652 29 100.0 32 ............................. ATGGCTCTAAACTCAAAAAGTTTAAGTGTTTA 1249591 29 96.6 32 ...G......................... GCATGGAAACAGGCTACAGTACAGCTGGACGT 1249530 29 100.0 32 ............................. AGTCAGGGTAAAATTAATTCAGGGCTTGTAAA 1249469 29 100.0 32 ............................. CGGGAGGCATAGCCTACAAATTTATCTCGCCG 1249408 29 100.0 32 ............................. AGCCTGGGGCTGGGTCAGTACCGGCAGTCAAT 1249347 29 100.0 32 ............................. TTAAATAAATCTGCCTCGCTGATACCACAAAG 1249286 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTAATTGAAGAGGTGCTTGCTGCGGGGGAAATATCGCCACCACTTCCTCCGGATGACGCTCAACCTGTTGCTATTCCTCTCCCTGAAACGTTTGGTGATGCAGGTCATCGGAGTGGATCATCATGAGTATGGTTGTTGTGGTAACTGAGAATGTCCCCCCACGATTAAGAGGAAGGTTAGCAGTCTGGCTTCTTGAAGTCCGAGCTGGTGTGTATATCGGGGACGTATCAAAACGGATACGTGAAATGCTTTGGGAACAAATCACGGTGCTATCTGAAAGCGGTAATGTAGTCATGGCATGGGCAATGAATACAGAATCTGGATTTGAATTTCAGACGTATGGTGAAAATAGAAGAATCCCGGTGGACCTTGATGGTCTGCGTATGGTTTCTTTTCAACCAATTGAAAAACAATGAGTTAGCGATCTTTAAAAATTTGATTATTTTGGTGGGATTTTCTTTGGTAAAAAAACCTTAGAATACAATAATATATTTTTAGA # Right flank : GATGAAACCATATAGCTTAATCATGGCTGGAAGTATTCCCCACCTGTCGGAGAAATGCATGCTTACACTTCAGGCCACCACTCTGTAGTAGGGGAAAGCTCTTCTCCACCCTGGTTAAGCTCCAGCAGCCACTCAATAAAGCAGCGAAGAACGCTGGAGTAGCACTTGCGGCTGGGATAATAGAGCCAGAAGCCTTCGGAAGGTGTAGAGAAGTCGGTCAGCACTTCTACCAGCTCGCCACTTTACAGCCGTAACAAAGCCAGCCCTTTCAGCACAAATGCCAGCCCGGCACCCATAGTGGCTGCTTCAATTACACTGGCGTATAACAACATGCTGCTCACCCAACTGAATGAGATAGCCGCTGGTTACAGCAGCACCTCAGCTCAAATAGCCCTGGCGTGGGTTCTGACTAAAGGTCAGCACATCGTACCTATCCCCGGCGCGAGCAAAATCACTCATCTGGAAGATAACTGTTGTGCTGCATACAGTGAGTTGAGGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1261333-1260817 **** Predicted by CRISPRDetect 2.4 *** >NZ_WHOY01000031.1 Pantoea sp. BAV 3049 NODE_125_length_5173969_cov_38.362724, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1261332 29 89.7 32 ..........................TTT GATGCTCATGCTATGTTCCTTTGTGAAATAGG 1261271 29 100.0 32 ............................. GCACGTCCGCTGGTAATTGATCGCGACAGGAC 1261210 29 100.0 32 ............................. CATGTTCACACGCCAGCCGTTCCCCAGGATAC 1261149 29 100.0 32 ............................. AACATTCAAACTGACTTTTCCGCCATTACGGC 1261088 29 100.0 32 ............................. GTAGGGTATTCGCCCCTTGAAACCTTGCTCAG 1261027 29 100.0 32 ............................. CGCACGGATACGGAACAGTTTTCTGCCAAAAA 1260966 29 100.0 32 ............................. CCATACCCACCGGCCAGGTGCCGGGTCAATTT 1260905 29 100.0 32 ............................. ATTTCTGGCTATCCATATGAATTAGCAGATGA 1260844 28 79.3 0 A..........G.TA........T.-... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCACATGCGTGGGGATAAACCG # Left flank : GTCTGACCGAGAAAGAAGCAAAAGAGAAGGGCATCAGCTACGAGACGGCGACCTTCCCGTGGGCGGCTTCCGGCCGTGCTATCGCTTCCGACTGTGCAGACGGTATGACCAAACTGATCTTCGACAAAGAGTCTCACCGTGTTATCGGTGGTGCAATTGTCGGCACCAACGGTGGCGAGCTGCTGGGTGAAATCGGTCTGGCCATCGAGATGGGCTGTGACGCCGAAGATATCGCACTGACTATCCATGCTCACCCGACTCTGCACGAGTCCGTTGGCCTGGCAGCAGAGATCTTCGAAGGCAGCATCACCGACCTGCCAAATGCTAAAGCCAAGAAGAAGTAAGTTTCTTTTTTGCTGATGGAAGCCTCCTTGAAGGGGGCTTTTTTTTGCATTTTATTTGCTGGATTAAAAATTAAAGACGGATTAAATTTTAACCAGGAAGTTGGTGGTTTTTTCTGGCCCTGAAAACTTCAATACTATCATTGGGATTATTTTAGG # Right flank : TCTGGTACTATTCTTTAATCAGGCAACCTTTCTTAGCGTGAAATCGAAGTGGATGGCATCGTAAGGGAAGAGAATACCTTGTTCACCTTTTTCGATAACGCCCTGGTTGATGAGCTTTTTAACATCAGAATGCACAGCTCTGACATCTCGATTCACCCGGCGTGCAACCTCACGTATTGAAACCTCACCAATGCCGGTCATTGCGTGGATGATTGCCATTCGGTTGGGGGATAACGTGTCGTGCAGTAATTCCCAGCTTATAAACGAGAGAAAGTGGCCTCTGGTCGACTCATCGCCGCGCAGTGCCGCCAGTGTGTTCTGTTTGAGTTCATCGAGTGAGGCTACCCGGATTGTCACAGTGGTCATAGTATTACCTCCTGAGTGTCTCTATATCGTTAAAAAAATCGTTAATCAGCGCTTCGATTGTGGTGAACACCGTATTCATCTCGGCCAGACCGACATGCTTGTGATCGCCTTTTCCCCGCTCATTGTCGTATCGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //