Array 1 45942-44850 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWNM01000012.1 Neisseria meningitidis strain Nm420707 Scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45941 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 45875 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 45809 36 100.0 30 .................................... TTTTCATCGTAACATAGTTGCTTGCGCCAA 45743 36 100.0 30 .................................... ACAATGTTTCGGCGCAACACATCAGCAGGG 45677 36 100.0 30 .................................... AAATTTAAAAACTTCAAAATTAAATACAAG 45611 36 100.0 30 .................................... AAGGGGGGTCAGGGGGGTCGGAAAAAATAC 45545 36 100.0 30 .................................... ATCAAAAACGCTCAATATAAAAAATCAAAA 45479 36 100.0 30 .................................... AATTTACCAAAACAAACCAATACCATGCAC 45413 36 100.0 30 .................................... GTGTGTTCGGCAACTCTGACCGCATGACGA 45347 36 100.0 30 .................................... ATACGAACTCATCCGGAGCCACGCCGAGCC 45281 36 100.0 30 .................................... AAAAATAACAGACTCATCAGAAAAATAAAT 45215 36 100.0 30 .................................... CCAGCCTACAAACCCTACAATCGCAATCAA 45149 36 100.0 30 .................................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 45083 36 100.0 30 .................................... ATGTTTTTGGCGAGATGGTCGTATGTATCG 45017 36 100.0 30 .................................... TCCCTTGGGATCTCATGCAATAATTTCCCC 44951 36 100.0 30 .................................... CCTGACAGGCTAGGATTTCCGGAAAATAAT 44885 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //