Array 1 37800-36752 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGJ010000040.1 Pectobacterium odoriferum strain A367-S5-N16 A367_(paired)_trimmed_(paired)_contig_40, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37799 28 100.0 32 ............................ CGCGACGTCATATGATGCCGCGGGAACGTTTT 37739 28 100.0 32 ............................ TGCAAACGGCGGTCTAGTTCTTCGTCGGTCAA 37679 28 100.0 32 ............................ GGTTACGGCAACGCGCAGGCGCTGGGCGCAAT 37619 28 100.0 32 ............................ AGTTTCACCGCGCATGGTAGATAGCTCATTTA 37559 28 100.0 32 ............................ GTGGCATGAAAAAATGGTTGGCGGTTTATATG 37499 28 100.0 32 ............................ GTGTAATGCTGGATTGCTATGTTGCATGGGTA 37439 28 100.0 32 ............................ TTAACAGGGGAACCTGCTCCCAGCTCTACGGA 37379 28 100.0 32 ............................ GCCATCGGCAACAGATCGACAGGCTAAGCGAT 37319 28 100.0 32 ............................ TTACAAATCAATGACGCAAGTATTTACACAAA 37259 28 100.0 32 ............................ AGCACGAGCCGGAAGTGTTTGAGGTTCGCCGA 37199 28 100.0 32 ............................ TTGTATGACTTCCACGCCTCAGATCGGTCACG 37139 28 100.0 32 ............................ TCAATGACAGCGCCTTTTTGCATGATGATGCC 37079 28 100.0 32 ............................ GAATGGACTTCAGCGGCTTCATGATGCTGGTC 37019 28 100.0 32 ............................ AATTAGCGTCTTCGACTGCGCTTGCGTGTTTG 36959 28 100.0 32 ............................ GACTTTTTTGTGTATCCACGAAACCGGGATAG 36899 28 96.4 32 ...........G................ AATCCGGTTGATACTCCAACTGTTGATGTTAT 36839 28 96.4 32 ...........G................ GTTAATTAGAACTCGCAATGCCAGCGATTCAA 36779 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================ ================== 18 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAAATGGGGGCTACTACACTGTCCT # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATTAGTTTCTTTTAGAGGGAATGAAAAATTGTGGGGATGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAATATTCATGCCATATTGACTGCACAGGAAGCAACGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCATCTCGTCGTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 977-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGJ010000001.1 Pectobacterium odoriferum strain A367-S5-N16 A367_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 976 28 100.0 32 ............................ AGCGATCGCGCCCACATCAGCCGTAGCGCTCA 916 28 100.0 32 ............................ TACTTACGAACGCGATGATATACGCCGCTTGT 856 28 100.0 32 ............................ GAATGGCCGTGCGGCGGTCGGGTCATAGTCGC 796 28 100.0 32 ............................ TGTGCGTTGATAAACGCCCACTTCACCCGCTT 736 28 100.0 32 ............................ ATTCCGATTACTCGCTAAGCGGCGTGTTTTCC 676 28 100.0 32 ............................ GCAGACTGTTAGCCAGTTCGGCGAACTGCTGG 616 28 100.0 32 ............................ TCCGGCAGGCTGGATAAAGTGCAATGGGCAGT 556 28 100.0 32 ............................ ATTACCAGCATCAATGGAGCGCATGAAATTAA 496 28 100.0 32 ............................ CTGAGATAGCTGAATAATAGCGTTTTCCGCTT 436 28 100.0 32 ............................ TCGCAGGCGTTCTGCTGGCTGGCTGTTTTGGC 376 28 100.0 32 ............................ TTAAAGAAATCACGGCCGTAGATATATCTGAA 316 28 100.0 32 ............................ GTATATAAACACAACAGAGCCAGTCTTGAGAA 256 28 100.0 32 ............................ GCAGCGGCACAAGCGGCTATTGAATTTGTCGG 196 28 100.0 32 ............................ ATAACGGTGTTTGCCAGCGATCCTTATCATCT 136 28 100.0 32 ............................ AAATCCCAGTGTCTGTACCAGACTACATGACG 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTAGCGATGGGGATATTCCAATACAGCGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCGGTGACGCCAGCGAAATAAATCGCATGCTAACTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGACTATCACAAATATTCTGGAAAAATGGTGGCTGCAAAAAATATTACCCAAACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATAAGTTACCGTTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCTACT # Right flank : AAGATTCGAGAAGAGGTTGTAACTGCTGTCTGGAGTTGCCCCTACTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 9965-10831 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGJ010000001.1 Pectobacterium odoriferum strain A367-S5-N16 A367_(paired)_trimmed_(paired)_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 9965 28 96.4 32 ...........C................ TATCCACTTCGCAGCCAACCAGGGCGGAAAAT 10025 28 96.4 32 ...........C................ ATTGAGCAATCGGCGATATACAGCCTCCACGA 10085 28 96.4 32 ...........C................ TCAACGCCATCAAAACCACCCGGCATTGTCAT 10145 28 96.4 32 ...........C................ AATAAATACCAGCAGCGGAAGCAATATTACTT 10205 28 96.4 32 ...........C................ TATGGGAATACGCGAATAACCAGACTTGTACT 10265 28 100.0 32 ............................ TAATGGGGAGCAGATGCTCATTAGTGCCAATA 10325 28 100.0 32 ............................ GATGATGGCCGCAGCTGTAGACGTGCTGAATT 10385 28 100.0 32 ............................ AGTGTTGACGTCTTCTATAAGAAATTCAGCGA 10445 28 100.0 32 ............................ AACGAAACCGGATATGAGGCAACCATGGAATC 10505 28 100.0 32 ............................ ATTGCGCATGGGCTTAATTGTCCGTCAGGGGA 10565 28 100.0 32 ............................ ATCCTGCCGACCGGACGATATTGCATGACCAG 10625 28 100.0 32 ............................ TAATGGTAAGCCCGACGGCATCAAGATTGTGC 10685 28 100.0 32 ............................ AACAAGGGAACGATGCGCAACCAGGCACGGCG 10745 28 96.4 32 ...........C................ TGCAAATGTCAACTATCGGCGGAATGGAAGGG 10805 27 78.6 0 .............C..A...-..C..GG | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTGACGGCGTGAAATTTCGCACCGTGCATCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTCAGCAAAGGCTGGCTGACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACTCCTGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTGACCCTTTTTTTACGACCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTTTCTTTAATAATCTGGTGGTTAGCGTAAAAACTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACGCATTTCGGGGAGCTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTGCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTGCGACAACCTGCGCCAGTATCTCGTCGGTCACCAGATGGAAGCCCCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATTGCCTTATTCCTGCTATCAGGCTTCACGCGCCAGAATCG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //