Array 1 182669-183490 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOE01000006.1 Salmonella bongori strain BCW_1555 NODE_6_length_185676_cov_3.27443, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182669 29 100.0 32 ............................. GTAATGGAAATTGCAACGTTAATATTTTAGAT 182730 29 100.0 32 ............................. CTGTATCTCAGGCTGGAATTGGGGCGGCTCAG 182791 29 100.0 32 ............................. GGTGCGCGTCTTGGTTTTGGCCCATACTTTGA 182852 29 100.0 32 ............................. ATTCTGTTTCCAGTGTATTTAATGGCGCTGTC 182913 29 96.6 32 A............................ CGTAACTTCATCTTCGCGAGGAGACCCCACCG 182974 29 100.0 32 ............................. CCGTCTGCAACAGTAAATATCACAGAACCGCA 183035 29 100.0 32 ............................. TTACTGTATCTTGAGTTTAAAGGGGCGCGGGC 183096 29 100.0 32 ............................. AGAAAAAGAGGTGGAAGGGGACAGCGAAAGAA 183157 29 96.6 32 ............................C TGTTGATTTCCCCGCTCGCCGGGTACGCCGCC 183218 29 100.0 32 ............................. TCCGCCTGTACATTCTGCTAAGAAGTGAAATT 183279 29 100.0 32 ............................. CTTGAGCATGAACACATCATGCAGGTGACACA 183340 29 100.0 32 ............................. AGGATAAAAACGTTCCAATCGTTGAAATTACC 183401 29 100.0 32 ............................. GCGGTTTTTTTATCAGTCAGGGTGAGGGAATA 183462 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCGGTTGGACGAGTACGTGATATTGAGGCACTGGATGAGTTGTTAGCCACGTTGAGCGACGATAAACCGAGAGTGATTGCTTTGCAGCCCATCAGCCAAAAAGAAGACGCGACGCGTCTGTGTATTGATACGTGCATTGCGCGTAACTGGCGACTGTCTATGCAAACGCATAAGTATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGACGATAAAAAGTGCTTTATAAACAATGATATACATTTAGT # Right flank : GTTCCATAACCATAATCTGCGTACCAGTAATCGTTCGTACCAAACAGTAAAGTAAAAAGAACCGTGTTTTGTGGGGGATAAAGGAGAGGGTGATGGCGTTAACGATTAAGGTATTGCTCGAAAATCATAAAGCCGCTGGTGTGGATAACGCTTTGAAGGCCAGGCCAGGATTAAGCTTATTAGTTCAGGATGAATCTACCTCGATATTATTCGATACCGGACCTGACGACAGTTTTATACAAAATGCATCGACAATGAGGATCGACCTGTCTGATATATCTGCGGTGGTGCTTTCACATGGACATTATGATCACTGCGGCGGCGTACCGTGGCTTCCTGATAATAGCCGAATCATCTGTCATCCAGAAATGGCGCGTGAACGTTATGCGGCAATAACGCTTCCTGGTATGACCCGCAAAATAAAAAAATTATCGCGAGAAGGGGACTATTCACGTTACCGAATGGTGTACGCGCGCGACCCTATGCCAATTAGCGACAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 71068-69391 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXOE01000020.1 Salmonella bongori strain BCW_1555 NODE_20_length_84915_cov_3.33178, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71067 29 100.0 32 ............................. ATGGCTTCATTTAAATTGCCTGTTGAACCTGT 71006 29 100.0 32 ............................. AAAATGGATAAATATAAAGAACTGTTTGAGAT 70945 29 100.0 32 ............................. TGATATTCCATCAGGAGGATATGCTGGATTAA 70884 29 100.0 32 ............................. CTGATTGATTGCCTTATTTCCGCCAGTTACTA 70823 29 100.0 32 ............................. CTTCTACGTTACTTGACTCCCCTAAATAATCT 70762 29 100.0 32 ............................. CAATCTGGCACAGGAATTACAAATAACCCAAT 70701 29 100.0 32 ............................. GCAAACAAAATCATACCCCTTCGCACGGAAAA 70640 29 100.0 32 ............................. CAGGAACTCAACGAAAACCAGATCGCCAGCAC 70579 29 96.6 32 ............T................ GGGCGACGTAACCGCCGTTATTCAGACACGCC 70518 29 100.0 32 ............................. CGAATAGTTCGTCAAACTGTTTATTCAAGTTC 70457 29 100.0 32 ............................. GACGCCATCGAGGATTCCATCCAGTTGATGGT 70396 29 100.0 32 ............................. GCTGCGCAGAACGAGAAGAAGTAATGGGCTGT 70335 29 100.0 33 ............................. GAGTGTTAGAGAGTGATGGGCGGGCGCGTATTC 70273 29 100.0 32 ............................. GAATTTTTTCGGCATTTGATGTAACGGTAAGT 70212 29 100.0 32 ............................. TCGTCGCGGCAAACGTCTATCAGTGAGTTCCC 70151 29 100.0 32 ............................. TCGACGACCACACCAACAGGAACTGAGCCACC 70090 29 100.0 32 ............................. ACTCTGCTTCCTCGCCTTGATCCGATTTCACA 70029 29 100.0 32 ............................. CCTCAAAACTTGGATTTGACCCTGATAAAATA 69968 29 100.0 32 ............................. TCACTATTTACATGTAAGGCGGAAACATTATG 69907 29 100.0 32 ............................. CAAAAAACCGTCACAGGATGAATAATGAAAAT 69846 29 100.0 32 ............................. ACCGGGTATTTAATCGTTCGTTTACCCTGAAT 69785 29 100.0 32 ............................. TCTAGATAATCCCGCATCACTGCATATTGATT 69724 29 100.0 32 ............................. CCAGCGAATGGCAAATGCAGCAATTTATTAAT 69663 29 96.6 32 ..........T.................. GGAAAACGGTATAAAAATTGGGAATTAGCTTT 69602 29 100.0 32 ............................. GTGCCGACGCGATCCACGCCAATTTACGTAGT 69541 29 100.0 32 ............................. TAAATAGTGTTATTTTCTAAACGCAATGTGTT 69480 29 96.6 32 ...................A......... TGGTTGGCCTTCAGTATGCCATCAAGATAAAA 69419 29 75.9 0 ............T........C.TTTA.T | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGGCCGCCGGAGAAATTGAACCGCCTCAACCCGCGCCGGATATGCTGCCGCCCGCGATACCGGAGCCGGAATCTCTGGGTGACAGTGGGCATCGGGGGCATAGTTAATGAGCATGATGGTGGTGGCAACTGAAAACGTACCGCCGCGTCTGCGAGGGCGGCTTGCTATATGGTTACTGGAGATTCGTGCGGGCGTTTATGTTGGCGATACCTCAAAACGCATTCGGGAGATGATCTGGCAACAGATAACACAATTGGGTGGAGAGGGAAACGTAGTAATGGCCTGGGCAACAAATACGGAGTCTGGTTTTGAATTTCAGACCTGGGGGGAAAACCGCCGTGTTCCGGTAGATGTAGATGGGCTCAGGCTGGTTTCCTTTCTTCCTATTCAAAATCAATAAGTTGAAGGCTCTTTAATAATAAGGAATTGTTGCTTTAGCGTTGGTAGGTTGTTATTAAGCCAAAAAACGTTTTTAGAACAATTACATAGATTTAGA # Right flank : GGATGTTCTGACACGTGGAGTGGTGAAATTGACTATCTGTCAATAAGACAACACGATGGACCATAATCATGGCTGCCGTCCGTATTGCTGAAATATCTCTTTATATGCTGCGGGGCGCAGATACGTCCCGCGCCAGTATGACTATTTGGGCTGGATGGGCGCCGCCTTTGCCAACTCTTTTACCAGTGGCAGCATTATCCGCACCACGTCGCGGCTACGGCGCTCAATTCGCCCAGGTAAGGCTTTATCGATATGCTGTTGATTATCCAGCCGTACGTTGTGCCAGCTATTGCCATCCGGAAAAGAGGCATTTTTCGCTCTCTGCTGGTATCCATCTTTTTTACCCAGACTCCAGTTCGTCGCTTCAACGGAAAGCACAGAAATCCCGGCGTCATCGAAAACTTCCGCATCATTACAGCAGCCAGTTCCTTTAGGATACGCCGGATTGAGTCCCGGATTCGTGCTGGCGGCGATACCATGTTGACGCGCGATGGCTAATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //