Array 1 424043-425595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQGH01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain CH32 isolate CH32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 424043 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 424104 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 424165 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 424226 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 424287 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 424348 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 424409 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 424470 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 424531 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 424592 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 424653 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 424714 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 424775 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 424836 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 424897 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 424958 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 425019 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 425080 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 425141 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 425202 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 425263 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 425324 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 425385 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 425446 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 425507 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 425568 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 441728-442367 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQGH01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain CH32 isolate CH32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 441728 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 441789 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 441850 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 441911 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 441972 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 442033 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 442094 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 442155 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 442216 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 442277 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 442338 29 96.6 0 A............................ | A [442364] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAGTCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //