Array 1 377352-375493 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMG01000003.1 Corynebacterium sp. 74A NODE_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 377351 28 100.0 33 ............................ TGCCGTGGCGTACACGGCTGGCAACAGGTCACA 377290 28 100.0 33 ............................ TGCGTAGCGACACCACGATCTGCTCAGCGTCGG 377229 28 100.0 33 ............................ GTCGCCGCTGGGTAGCGTGTTTATGGATAGCAC 377168 28 100.0 33 ............................ CGGAGCGCGCCGCAGCGGGAATGTTGTCAGCGG 377107 28 100.0 33 ............................ GAGAGAGAAACACACACAGAAAGAGAGAAAAAA 377046 28 100.0 33 ............................ GGATGATACCGAGTATGACACTGAGTGGATGGG 376985 28 100.0 33 ............................ ATCACCACCGGCCCCGAGGATGGCTGGAAACAA 376924 28 100.0 33 ............................ CTCCCGGTCCTTCTCCATGAAATCGCCGTAAGC 376863 28 100.0 33 ............................ GGAGACAGCTATGACCCCTGCTGAGCTTGCGCG 376802 28 100.0 33 ............................ CCTGCGTGGCGCGGACCTGCGTGGCGCGGCTAC 376741 28 100.0 33 ............................ CGCCTCGAATAGTATCTCGCCGGCCCCGTGTCG 376680 28 100.0 33 ............................ CCACGGATCAGGCAGTGGGCAGTGACTCCGCCT 376619 28 100.0 33 ............................ CTGCCTAAGGCGGTGGGGGATAAACTGACTGGC 376558 28 100.0 33 ............................ TGTGGAGTCGGGCGGCTACCCGTCGCGGGTCAA 376497 28 100.0 33 ............................ ATGCCCTGGTCTGGAGCCGCTCCGCTCTGGGAG 376436 28 100.0 33 ............................ GGTATCTAGGAAAATGTCGCGGATAATCTCCAC 376375 28 100.0 33 ............................ GACCTGCTTATCCGGCGTGGCTACACCGCCTTG 376314 28 100.0 33 ............................ GTGAGGAACTGGAGACCAACGCGGCTGATCTAC 376253 28 100.0 33 ............................ GGGATTTTGGGGCATGATCACCGACTTTTTCGC 376192 28 100.0 33 ............................ GAACACCAATATCCGGCGATCCCGCATCGATCC 376131 28 100.0 33 ............................ GAACATTCACGTGACTTTTGATCGCTCGCTGGA 376070 28 100.0 33 ............................ GGAGCTCGCGAAGAAGAATCAGGCCGACGGCGA 376009 28 100.0 33 ............................ CGTGGCAGTAACATACGAATCTTGGTTTTCGTC 375948 28 100.0 32 ............................ CTCCAGAAAGGGAGAAGAAAATGACCACCTAC 375888 28 100.0 33 ............................ GCTTCACGCATGAGCAGCGCGTTCGCCTCCGAA 375827 28 100.0 33 ............................ CTGACCTCTTTACCTCGCTGGCTGATCTAGACC 375766 28 96.4 33 ....................C....... CATTTATCAGTATGTGGCCGACTACATGGGCAA 375705 28 100.0 33 ............................ GCTCACACCCGACCACACCTCTGGCTCCCACCA 375644 28 100.0 35 ............................ CACTCTTATGCTGTGGGCTTTTCCCGAGCCGGCGT 375581 28 100.0 33 ............................ GCCCGGATTGCCTGGGATGCCGGTTTCTTCGCC 375520 28 92.9 0 ..........................TG | ========== ====== ====== ====== ============================ =================================== ================== 31 28 99.7 33 GTTTTTCCCGCACGCGCGGGAGTGGACC # Left flank : TTTTAGATGGCGGTAAGACAGAGCTATCTGGAGGGTGGCTTGCCGCCAATGGCATCGTATTCAAACGTATCCAGGACGCCCCGCCTGTCAGCGTTGAGATGATGCTTCACGCTAGTAAAGGATGGCAGACCTCCCCAGAGCTTGGAGCATCTGACCATCTTCTTGACCGGCTCTCGGATACAGCGCCCGACACGGTAAGAGTAGAAGAATACTTACCTATTACCGTGGGCATAGCCGTGTCAGGGCGCCCATTGGCCCAACACGGAGTTGCTCATCTCAAAGGCCGAAAGAGGTTTCTTCCGCGCCCGACATATCCAGTAAGTTTATGGACTCTAGAGGTTCTATCGAGGAGACACCGTGGTTCTGGTCTGATGGCGGAGGAGGTGACGCGCGGGAAATTTAAGACTGTTGCTCCACCGGTCGTAGTTTAGTTCTGTAAAGGCAAATAGAAGTTGAATCTATACGCCTTGTTTGCTCGTTAAACCTGCTGTTCGCAGAGT # Right flank : CAAGCTCCTGTGTTTGCCTAGCGAGCCAGTCGAGTTTGCCAAGGTCACCAAAAAGTGACTTATTGTGGAGCGTAAGGGGCATCGCAACGCAAGGTGTCCAGCTGTCACCTTGTTGAAAGCATGCATGAAGCATCGTTTCCTGAAGCGGTTGTGCCTTGGCAGCGGTACTGGTTTGTCCGCTGTAGCTTGTACGCCTGTGACAGGAATCGGTTGCTGGGCACTGAAGACTCTTTCTTACTGTGGTCGGGCTGCATATGGGCGGCCACCAATTACCGATCTAGATCTGAATACCACTTATCTAGCGATGTACCGATCCAGTTGAGTAGTTTTTCCAGAGCGTTTTAGGTGGAAATTTCACCGCTCCCGCGTTAACTACTCCGTGGTCGTAGCGATACTTCGTTTGCGCTTCTGTCTTGAGTACGGCGGGTGCCGTTTTCAGAAGTGTTCGAATGGACGGTAGAAAACATAGATGCGGCCCTATCCGACGAGGGAAACCTCGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACGCGCGGGAGTGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-10.90,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 219132-219487 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMG01000004.1 Corynebacterium sp. 74A NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 219132 36 100.0 28 .................................... TGACTCGATCGCGCCGACGCGGACGAGA 219196 36 100.0 28 .................................... GCCCGTAGAAGAATCCACTGATCCCGGC 219260 36 100.0 28 .................................... TATGCGGGCAGTGTCAGTGATGGTGTCG 219324 36 100.0 28 .................................... CAGCAGAATGCCGTTGCCAGCCAGCCGC 219388 36 100.0 28 .................................... CCATCGTGGGTGGCGATCGTGACCCCGA 219452 36 97.2 0 .................................C.. | ========== ====== ====== ====== ==================================== ============================ ================== 6 36 99.5 28 GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Left flank : CATTCAACAGCGATGGCCAGAGTGTTTCTACGGTCTTTCAAGACTTTGCGCAGCATTTTGGCTTATACGTCGAAGGAACAGTGGATCGGCTACAGGTGCCACGTTGGGAAGGGCAGCTCAGTGCCAGCGAAGGACAGTGAACCGGTGTGGTGCGTCGTAATGTTTGATCTTCCGGTCAAGACCAAAAACCAACGTAGGGAAGCTAATCGGTTCCGTAACCGGTTGTTCGACCTTGGTTTCTGCCGCGCCCAGTTCAGTGTCTACGTTCAGTATTTCCCACTGGCGGCGCGTCTCAGCACGATAGTAAAACAGGTGAAATGCGAACTTCCCGCAGGCGGTGAAGTGCGTATCTTGTCCGTGACAGACCAGCAGTGGGCAAAGGCGATCCGTTTTTCGAGCCACAAGGAACAAGCGGTCGAGAAAATCCCCTCTCAACTCACGATTTTTTAAAAACGCATGCTGAAAAAGACCCAGTTCAGGCCCTGTTTCTGGGCCTGACT # Right flank : CGATAGTGGGCACAGTGGCTATCTCGGTGCAAGCCTTTGGCGGTACATCACGCTTAACGGCAGTACCGCTTTCCACGTGCTGCGCTGCGATGATCCTACAACCACACACTTGTGAATTTCTGTAGGATCACCGCCCCGCGACCTACCGCGTCGCCTCCTCCAACAGGTACAGCACGTGCTCATAGCTCCGCCCGGTGATTTGCTCCATGCCCAGCTCGCAGGTGCGGTTGGAGGACACATAGGCGTCCACGCGCCCGTTGGCTTCGGCCTCGGCCAGCCCGACGCGCTCATCGCGGGTGGCGGCGTCGAGAAGTTCGGGGTGGAGCATGCCGCGGTCTCCGGCGGTGCCACAGCAGCCGGCGCCGCGGGGCACGAAGGCCTCCTCGGCGGCGAAACTGGCGACGCGCACGAGGGTGTCGCTGAGTTCCATGTGGGCCAGCGAGCAGTTCGGGTGCACGGCCACCCGCCCGAGGCGGCGGGTGGGTTCAAGGTGCTCAATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTATCAGGGGTATATCGAACTGAACCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 105148-108591 **** Predicted by CRISPRDetect 2.4 *** >NZ_PQMG01000006.1 Corynebacterium sp. 74A NODE_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105148 29 100.0 32 ............................. CTCACCGGCGAAGCATGGGTGAGTGGCAATGC 105209 29 100.0 32 ............................. GCCGTAGTGAGCGGGCGGTCGAAGGTCGGCGG 105270 29 96.6 32 ............................G CACGGCCCAAAACAATACTGGTAGTGAGCGAT 105331 29 100.0 32 ............................. GCAGATATCAACTCTCGGTCTATCGGTATTGA 105392 29 96.6 32 ............................G GTCAAGGACCTCGGCTCTCAGGGCAAAATCAC 105453 29 100.0 32 ............................. TCTGCAACGTGTAGGAACATCTGTCTAGCGCG 105514 29 100.0 32 ............................. GCTTATTCGAGCGCTTGGGCTGTTCGGTGGCG 105575 29 96.6 32 ............................T ATGACTCCGCTACTGTCAGCGACCGGGCTAGC 105636 29 96.6 32 ............................G ATCGTCCCGGCCGATATCTAGGTATCCGTCTG 105697 29 100.0 32 ............................. ATCGACAATGAGCGCGCCGACTTTATCCTCGA 105758 29 100.0 32 ............................. ACCGCGTCCCCACTCGGGGTAAACCGCAACTC 105819 29 96.6 32 ............................G GAGAATCGATGAGAAGCTGGACCAAGCTCGAG 105880 29 96.6 32 ............................G CTAACAACGTTGAGCTGCCAGTTGACTATGAG 105941 29 96.6 32 ............................G ATCGACCAGCACAAGGCCACATTCGAACTCAT 106002 29 96.6 32 ............................G GAGCTGGAGCACATTTTGTGCTGGCCTAATCC 106063 29 100.0 32 ............................. GCAGACATTAATGCCCGGTCTATCGGTATTGA 106124 29 96.6 32 ............................G AGAGAGAAAGAAACTCTCACCACACACAGAAA 106185 29 100.0 32 ............................. ACGCCGATGTTTTCGGGCCCGATGGCTTCCTG 106246 29 96.6 32 ............................T ATTTCCGGCCCGCCGCGATGGCAGATTAGCGA 106307 29 96.6 32 ............................T GTGGTGTCGATCCTAGGGGCTTGGCGCTGTAT 106368 29 96.6 31 ............................G ACCGCGACGACATCTCGGACGATGACAAGGA 106428 29 96.6 32 ............................T TCCGCCGAGGGCATGAGCGTGCTCACGGGGTT 106489 29 100.0 32 ............................. GAGAAATCCGGCAGAATGATCGACGCGGGCCC 106550 29 96.6 32 ............................G GGCGGTGGCGATACCCTCACCGCGGTGCTCTT 106611 29 96.6 32 ............................T TCGCGCAGGCGCTGCTGGCTGTGGTGTCAGTT 106672 29 96.6 32 ............................G GGAACCTCGAAGGGTGGGACGGTCATTTCATT 106733 29 96.6 32 ............................T TCGGCCCGCTCCTGGCTGTCGCTGCGCAGGAA 106794 29 100.0 32 ............................. ATCGCCTTCATGTTCGTGACGTTGCTGGTGTC 106855 29 96.6 32 ............................G GATGCTTTCATGGCACTCACCGAGACTGAGCA 106916 29 96.6 32 ............................T CGATGCACCAAGGGCTAGCTGACGGCTCCCTA 106977 29 100.0 32 ............................. AGCGCGGCCCGTATCGCCTCGATCTCAGAGAC 107038 29 96.6 32 ............................G GGGCGCGTGTCCAGCTTCAGCTTGGCACGAAC 107099 29 100.0 32 ............................. ATGCTGTTCATGTTCGTGACGTTGCTTGTGTC 107160 29 96.6 32 ............................T ACGAGATCGAGGACACCCAGCTACGCGGTGAT 107221 29 100.0 32 ............................. ACAATAAGGCGCGCCTTCCGAAGTCCAGCTTC 107282 29 96.6 32 ............................T CCCCAGTTCGGAGGGGGAGTACACAGTGATCC 107343 29 100.0 32 ............................. TGCTGGGCTTGCTGCGCGTGCGGCTGCAACCA 107404 29 100.0 32 ............................. CCGCCACAGATGGACTGGGATTACATCTACTC 107465 29 96.6 32 ............................G AATTCGACATCGACGCCATCGCGGACGAGGTG 107526 29 100.0 32 ............................. CCGTCCCGACAGCCGATCACCACTACTGCCGA 107587 29 96.6 32 ............................G TCGCCGCTGGGTAGCGTGTTTATGGATAGCAC 107648 29 96.6 32 ............................T CATCGACGCCGGCTACCGCGGAGAAATCGGGG 107709 29 100.0 32 ............................. CGGCGCCCGGCCGCCCCCACGGCGCGTGGATA 107770 29 96.6 32 ............................G TAAGCCCCGCCGTGTGCGGGGTTTCTCTGTTG 107831 29 100.0 32 ............................. GCCTTTTGGGCCAATGTCAAGAACATTGGTGA 107892 29 100.0 32 ............................. AAAAAACTGTCGCGCGTTGAGGACCGCGCCGC 107953 29 100.0 32 ............................. ATGGGCGCGGCGGCCGGCCGTTTGGGCGCGAC 108014 29 96.6 32 ............................T CAGTGCGCGGCGCAGCGGCTCGGTAATTCTAT 108075 29 96.6 32 ............................T TCCCACTCGGGCAGCGCCGGGTCGGGGTTGAT 108136 29 100.0 32 ............................. TGGTGCCCTTCACCGAGGCAAGAGCATTATCC 108197 29 96.6 32 ............................T TGCTAGATCCGAAACGGTCGATCCGCACCGAG 108258 29 100.0 32 ............................. TGTGATTATCCGCACCGGCAGCAGGCCGGAGC 108319 29 100.0 32 ............................. TTTTTAAGCAGGTGATTCTCGGCATCTACCAG 108380 29 100.0 32 ............................. CAAAAGTCCTCTTCGCTGAGCTCGGGGTCAAG 108441 29 96.6 32 ............................G AGGACTCGGCAGTAGTCGACTACATTTTCCGC 108502 29 96.6 32 ............................G TCGGCTCCCTCGGTGAGCACCTGCACGGTGGC 108563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 57 29 98.2 32 GTTTTCCCCGCACACGCGGGGATGAGCCC # Left flank : TGTCCTGACTGCGGATGCGGAGCTATTGCTATGGAGTGAATTGGAGCTTGTGTCCTCGGGTGTCTCCTGGGCTGAACCGGCGAGTTCATCATGATCGTTCTCGTAGTAACAGCGTGCCCTGCAGGCTTACGGGGGGATCTGACTAAGTGGCTCATGGAGATTGCGCCGGGCACGTTTGTGGGAACTCCTTCAGCCCGGATCCGTGACCTGCTGTGGGATAGGACCGTAGGCCTCTGCAAAGATGGGCAAGCCCTTCTCGTGTATTCCGCCGACTGCGAGCAGGGCTTCGAATTCAGGACGCATCGCCACAAGTGGATGCCTCGTGACTTCGAAGGCCTGACCTTGATGGTTCGCCCTGGAGCGTCGGACACGCCACGGCGACGTACTGGCTGGAGCAATGCCCGACGCCAACGCCGCACCTACAGATCGAGGTGAGAACTTCCCGCTACAAGTTGTAGCTATTCTGAGCTAGGCGCTAATATTTCACCAGCTCAGTAAGT # Right flank : CACCATCTCGTGCGGCCTAGCTCCGCTTCCCAGTTATTTCTAAGGACTGCCACCCGTCGCGTATGCCGAGATAAAAGTGTGCGCTACGGGCTGCGAGGTGTGCGTGGTGTCTATTGCGCGTTGCTGCGCGGTGTGGGGGTGGCCCTCAGCCTGCACTGCAGTGTCGCTGTTGGTTGAACTGGTTCCTGTGGCACAGCCACCATTCAGTCAGGGGGGCCCTGGCTCTGGTATTTGATTACTGCGGGTGAACATCGTGTGGTGTGTGAATACAGGCCAGGATGAGAGCACTCAAGCCAAGATTCCTAGACGCCCCACGATCACCTTCTATGCCCTCGGTGGTACTCATCGTGCCGTAGCCGCGGATAGGGCAATGTGGGCGTCGATCATTGGCTTGTCCTAGTGTGCAGTACGTAGTGATGTTGCTCTCTAGCCACGGCGGGTGGCTCACCGAGAGGGTGAGTCAGCTGTAGGGATTAGTGATACTCATCGTGTGTATCGAT # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //