Array 1 18557-17552 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRE01000018.1 Lactobacillus crispatus strain UMNLC14 crispatus10B5S27121, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18556 29 96.6 32 ............................C AATTTAAAAGAATGTTTGTTCGATGATTTAAC 18495 29 96.6 33 ............................C TATAGATTTGCTCTTCATGAACTATGTCTGTTA 18433 29 96.6 32 ............................C AAGCCAGCAGAAAAGGCAGATAGCACTCAAGG 18372 29 100.0 32 ............................. AGTGACATATGTCCGTCTAACAGGACTCATCT 18311 29 100.0 32 ............................. AAACATGTCATGGAATGAACCATTTTGAATGT 18250 29 100.0 32 ............................. TTAAGTGATAAGAAAGATCAAGAAATTGATCA 18189 29 96.6 32 ............................C ACATAACCCGAGCCAAAACGCAAAAGAAAACT 18128 29 100.0 32 ............................. ATCTTTTACAAGGCGGAGATTTGAGCAACACT 18067 29 100.0 32 ............................. GATTGCACCTATGGCAGTGATTGCGGCTGTTG 18006 29 96.6 32 ............................C ATCATTTAGAGCCATGCTTTAAATCCTCCTTT 17945 29 100.0 32 ............................. TGTATCAATGCTAATAAGAACGTTTTACCTGG 17884 29 100.0 32 ............................. TGTCATCACATCTGTAGATTTAAAAAGATTGG 17823 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 17762 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 17701 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 17640 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 17579 28 82.8 0 .............A.........-..TGC | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.2 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAAGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2900-675 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRE01000046.1 Lactobacillus crispatus strain UMNLC14 crispatus10B5S27148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2899 29 96.6 32 ............................C TTATCAGTAAAAAGATAACCGTGATAAGTAAC 2838 29 100.0 32 ............................. GTTCCATTAGTGTTAGAGTAAACACAAATCAT 2777 29 100.0 32 ............................. GGTAGGAAGTAATCCCACCATTAAATCATCAT 2716 29 96.6 32 ............................C TTGATCTCTGCGCACAAGTTCACGCTTGCAGT 2655 29 96.6 32 ............................C GCCTGCTGCTCGTGCCAGCTTAGCAATTCACA 2594 29 100.0 32 ............................. ATCGATGTTCATTTTATGCTTCCAATTCAAAT 2533 29 100.0 32 ............................. TAAATTCTAATCCTTGTTAGTTGTCTTATATA 2472 29 100.0 32 ............................. CACCTAAATCAATACCATCGCCTTCTGCGCCT 2411 29 100.0 32 ............................. ATCGGTGCTGTTGCCGTGGTGTCTAACGCTAA 2350 29 100.0 32 ............................. ATAGCGTCCCAAAAGCCATAAGACAAAAGGCT 2289 29 96.6 32 ............................C ATGCTTAAGGGTTAATTATGTACGAATTAAGA 2228 29 100.0 32 ............................. AATCTGCTACTTTTGCTAAATCTTTTCCTTTA 2167 29 96.6 32 ............................C ATCGGTGACGATGACACGCAATTACCATTATT 2106 29 96.6 32 ............................C ACAAGAAGAACAACAAGAAATTGAAAACTTAT 2045 29 96.6 31 ............................C CAAATTCCCATGCGTCCATTAATACACTAGG 1985 29 100.0 32 ............................. GTTCTGTTCTCCATTTCCTTTTCTGGCTTTAG 1924 29 96.6 32 ............................C AAAATAGGCTTATCGTATTCGTCCATTCTAAT 1863 29 96.6 32 ............................C TATTGTATCTACTCATGTTGACGACAGTGGTG 1802 29 96.6 32 ............................C TACTCAAAATCTTGCTTTGACCAAAGCTGTAA 1741 29 96.6 32 ............................C ATTTTTCTGCTTAATGTTACCTGCAGTTGATT 1680 29 96.6 32 ............................C TAATGACAGCAAAGACAAGTTTATTTATTGGC 1619 29 100.0 32 ............................. CATTTAGTCTCATAAGTGGCAACTGGCTGTCT 1558 29 96.6 32 ............................C GTGTCCTTGCTTAATGTACTCAATATACTTAT 1497 29 100.0 32 ............................. AACTGATCTACTTGCATGAACTCTTTTAGTCA 1436 29 100.0 32 ............................. TGACTTCAAATGAAACATACGATGGAGATCTA 1375 29 100.0 32 ............................. GTCACCACGGAACGTTAATTCTTCATGGTGAC 1314 29 100.0 32 ............................. ACGTTGTTATGAGTTGGCGCACCGTCTGGCAC 1253 29 100.0 32 ............................. TAAAGTAAATCCTAAAACCGTTACCCGTGAGA 1192 29 96.6 32 ............................C GGATGATCACTTAAGAGAAAGGATTCTTAAAA 1131 29 100.0 32 ............................. GATTAAAGAGCAGTTGGAGGACTAATGAAGTT 1070 29 100.0 32 ............................. AGCTAAATCTCTAAAACTAGTTAATTCTTCAG 1009 29 96.6 32 ............................C AAAATTGCAAAAACTAGAAAGAAAAGTGAAGA 948 29 100.0 32 ............................. ATTAATGTTGTTGCTTATACTCATACAGTTGA 887 29 100.0 32 ............................. GAAGAGAAGTGCTGCTAACCGTAATTATTGCT 826 29 100.0 32 ............................. TAATGGCGTTGGTAAATAATCTTTGTAGTAGG 765 29 96.6 32 ............................C AATCTAGTTTATGATACAATAAACACAGATAT 704 29 86.2 0 ...........A.....T......T.A.. | A [683] ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGACAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : GTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCAATCACCAAAAGAGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGCCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTGAAACTGTCAAATCTTTTGTGTAAATAGATCTTTCTCGTAAATTGATTTTTTAATTATTTATTTAATCAAAGTAGGATTCTAAGGTGTCCTGAACCTGACCAAAGCCTTTATGAATTCGATTGAAATAACGGTCATTGTAGCTCATTGCCTGAATACCAATAAAAGCATCAAGCGACTGTTCAGTTGGAAACTCTGCCTTAGGCTTA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8133-7429 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYRE01000046.1 Lactobacillus crispatus strain UMNLC14 crispatus10B5S27148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8132 29 100.0 32 ............................. AATTTAAACGTGCTAGAAATGAATAATTTTAA 8071 29 100.0 32 ............................. ATGCTGACTACCAGCTTTGAACATAGAACCAA 8010 29 96.6 32 ............................C TGTCCGAAATAGCTTTAAAGTTAGCATTCGCT 7949 29 100.0 32 ............................. ATTAGCGATATGAGTTGCATTTAATGCACCTA 7888 29 96.6 32 ............................C TTCACTTTCTTGCAAAAACTTTTTAACTAGTT 7827 29 100.0 33 ............................. GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 7765 29 96.6 33 ............A................ GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 7703 29 96.6 32 ............A................ TAAAATAATTAAGGAGGGAACTCCAAATATCG 7642 29 93.1 32 ............A...............C AATTTCTTCCTTCGACATGTCCTTAAGAGCAT 7581 29 89.7 32 ...........ACA............... GACAGCTCTGCTGTAGTGATCGAATCAGACAA 7520 29 86.2 31 .....T.....ACA............... CCGACGGGGTACCCCGCGGCTGTCCATCATC 7460 29 82.8 0 ...........ACA.........A..A.. | G,A,C [7431,7434,7438] ========== ====== ====== ====== ============================= ================================= ================== 12 29 94.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : GCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAGTTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //