Array 1 173865-172904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOPD010000001.1 Lachnospira sp. NSJ-43 M7_ctg0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 173864 36 100.0 30 .................................... CATGATATTCACAATTATGCAGCAGGGAGC 173798 36 100.0 30 .................................... TACTACAGCAATAACAGCAGACGGGCAAAT 173732 36 100.0 30 .................................... TGCCAAGTTCCTCATTTTCTGCAATATCCA 173666 36 100.0 30 .................................... GAAAAGGCTGTAAATAAGTGATTATTATTG 173600 36 100.0 30 .................................... CTTTTCCCGCTGCAAGTGACCTCTATTTCC 173534 36 100.0 30 .................................... CAGAAAGGAGAATTGAGAGGTAGAGAAAAT 173468 36 97.2 30 ...............................A.... TGACTGAAAGTGCCGTGCTTAACAGGTTGT 173402 36 100.0 30 .................................... ATATAAAGGTCATATTTGTGAACTTATTGG 173336 36 100.0 30 .................................... AAGAACAGCAATCAATGCGACTGTTAAACC 173270 36 100.0 31 .................................... CGACCTCCTTTTCCGCATTCGTGCATGTATG 173203 36 100.0 30 .................................... CAGAGAACATAGAGAAAGCACCAACTACTC 173137 36 100.0 30 .................................... TGATCATCTGTAATATGGTCGATATTTAAT 173071 36 100.0 30 .................................... ATACTGCCGTCTTCACGAACAGTTATACGC 173005 36 100.0 30 .................................... TGCTGTATTTATTTCTATCATATGCTTCCG 172939 35 88.9 0 ......................A........-.G.T | T [172913] ========== ====== ====== ====== ==================================== =============================== ================== 15 36 99.1 30 GTTTGAGAGCTTTGTTAATTCAGAAGAGTATCAAAC # Left flank : TTTTGACAAAACTGTATAAGGAATTGCAGGAAATTGCTGATACAGTCTGTCAGGAAAAATATATACAGGTAAAATCTGATTGGATTGCGTTTATGGATGAACTTGCAGATAATAGTTCATATGCTCTTGAATTTGATTTGGAATTTGAAATGGTGTCGTTGTTAAAAATTTTTAATATGCGTCTTTTAAATAATGCTCAGGGATTGATTGAAAATATTATTGAATATATAAAGGTTCAAAGCAGAATATGTAATATAAAAAATTTCTTTTTTGTAAATTTGAAAGATTATTTGAATGAAAAAGATATTGACATGTTTTATGAATTTGTCAGATACGAGAAGGTTAATCTTATTTTAGCAGAATCACACCAGTCTCATGTGAATTTACATGAAAAACGCTGGATTTTAGACATGGATAGGTGCATAATAGAACCAGATGAATTAACAGTGTAATCGCATTGCACATACAGCTCGGTGAGAACCTCAAATTTTGAATTTGAG # Right flank : AGCTTGATTTTATGGCTTGTTAATAAAATATATACATCATGAGTGGGCATATGAACTCGCTCACTTTGAGATGATTAGCACAATGGTGCATCAGCTCACACGTAACATGACGGTTGAACAGCTTAAAGGAACGCCGTTTGAAGCATACTATGTTGACCATACGGCGGGAATCTGGCCGCAGGCTGCAGGCGGAATTCCTTTCAATGCATGCGAATTCCAGTCAAAAGGTGATGCAATTACAGATTTAACAGAAGACATGGCAGCAGAGCAGAAGGCACGTTCAACATATGAGAATCTTATAAGGCTTACAGATGACCCGGATGTGCTTGACCCATTGAGATTTTTGAGGGAGAGAGAAATAGTGCATTTTCAGAGATTTGGCGAAGCACTTTCAATGATTCAGGATAGTCTCAACTCAAAGAATTTCTATGCATTTAATCCTGAGTTTGACAAAGGCTGCAAATAATCAGATAATAGCAATAATACATGTCAATAATGAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGCTTTGTTAATTCAGAAGAGTATCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 96779-95437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOPD010000004.1 Lachnospira sp. NSJ-43 M7_ctg0004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 96778 30 100.0 36 .............................. AGTTGTTTTAAGCAATATTTCGGATTTGCAATATAT 96712 30 100.0 36 .............................. CTATGAAAGTGCAATGAGCAATGTGGCAGCAATATC 96646 30 100.0 35 .............................. TCAGATTACCGTTCTTGTCTTTTAAGCCTGTGCAT 96581 30 100.0 36 .............................. TAATCTTTTGATTGCAATAGTTACTCCGTTTACTAT 96515 30 100.0 36 .............................. GTCGCCCTTGTAGTAATTCCACAGATACTTAATAAC 96449 30 100.0 36 .............................. GCTCTTGCAATAGCAGGAGCTTTTATTGGTTTTTTA 96383 30 100.0 36 .............................. CATGTAGCACACAGGAACAGTATTCCTTTTAAACAG 96317 30 100.0 36 .............................. GAGCACTGCAGACACATAAATTCATATCTGAACTTA 96251 30 100.0 35 .............................. TTGAAAAATCTCTGAAGCATCTTAGCTGTAATCTC 96186 30 100.0 36 .............................. TGTGTAATCGTAATTAATTGCAAGCGGCTCAACTAT 96120 30 100.0 36 .............................. TGTTTCAGGTGGATATAACTATATTGTGTGTGATTA 96054 30 100.0 35 .............................. TGTTCTACTGCTGACAGTAAATGAATGTATACTGT 95989 30 100.0 36 .............................. AAGCCCCTTTTAAAGAAAATTTGAAAGAGGAAAATA 95923 30 100.0 36 .............................. CGTAGAAGGACTTGTAAGTGGAATCAGGTCTATGAT 95857 30 100.0 36 .............................. AGCGTTCAGTTCAGCACTTGCTTCACTTAAAGTTAA 95791 30 100.0 35 .............................. CCAGCGGGAGCAGATTCTAAAATAAATGTATACCT 95726 30 100.0 35 .............................. ACACTTGCACTGTATACAAAATTAAGTAATGTAAT 95661 30 100.0 36 .............................. AAGATGGTTCTGAATATAATGAAGATGTTGTTACTT 95595 30 100.0 34 .............................. AAAAACGCTACAATCCGCTTGTTTACTGACTTTG 95531 30 100.0 35 .............................. TCTGTGCTTTCATTGTAAACAACGTAAGTATTCAT 95466 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 21 30 100.0 36 ATTTACATTCCACTATGTTTCTATTAAATC # Left flank : TTTGCGTGAATCTGCTTTGAAACATCCTTTACCTTGCCAGTTTGAATATACAGCTTTCCTTCAAAAATGTGTACTGTTCCAAAAGGTCTAACTCTTGGCTGGTCGCCTTCCACTGTTGCCAGATAATATGTCTCTGCTTCTTTTAAAAATTTAGCTACTCGTTCCATTATTTAATCCTCCTGATAGTTACTTAAATAAATCCATAATGCCAAAGCTCGTCTTCTTATAAACCTTATTGTAAGCTGCTTTCTTTGGATTTTTTATCCACCCTATGCCATTCTTTCCATAACCTGGAATTACAGCTTTCTTAATAGCACGCTTAGCTTTCCCTGTTGTTCTTGCCTTTATTGATTTCTTTATACTGGGTGTTCTCATTCCAAATCTCATTTTAATTGCCTCCGTTGTTCCATAAAAATCACCTATTATTACTATCTATCAATAATAGGATTATACCACCATTTACCCCTCTTCAACTTGATATATTAAATAAATTGAAAGAC # Right flank : CCGTAACACAAAAGTCGCCTATTTTCAGGTACTACCAATCTATTTTCTGTCGACTCTCAATATTTATATATTATCATCTTGTAAATTTTTTTACAATAACATCAAATATATAATAATTTCAGCATTGTCGATCTCCCCGCATTTTTACATTATCATCGGTCGACAGACAAATTATACACAATATACAATCACATTAAATTATAAAACTTGTTACATCTGCCTGCTTTCCCCACCATTCCTTATCAAGCCACTTCTGTTGTCTGCTTTTAAATAAAATGACAGAATCCAATTCACTATTAATATAAGGTTTTAATTCATTCTGCATTTTTATTAACTGTACCTTTGATAGTTCACCTTCAAAAACAGAGTTTTGTATGTGTGACATATATTTCTTGCATATTTTAAAAATATGTGACCACCTTTTTCTTCCATTTTCATCTTTACTTACATCATATACTAAAACAACATACATATTTTCCCCGCTTTCAAGTTAATACACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTCCACTATGTTTCTATTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 171509-172205 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOPD010000004.1 Lachnospira sp. NSJ-43 M7_ctg0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 171509 36 100.0 30 .................................... CTAAAAAAATTGATGATGCAACACAGAAAT 171575 36 100.0 30 .................................... ACTCGCACCGCAGGACAGACAGATTCTTTT 171641 36 100.0 30 .................................... TATCTGTAGCACAAGTTAGGTGTTGTCTAC 171707 36 100.0 30 .................................... TAATGCCGAAACAAGATAGCATAAAATTAT 171773 36 100.0 30 .................................... CACAGGAAAAAGCTAGAGAGTTGGCGGATA 171839 36 100.0 30 .................................... TGAAAATACGATGTATCAGGAAGTTTATGG 171905 36 100.0 30 .................................... AAGCATGTCAAAGGCAACAATTGCAATTGG 171971 36 100.0 30 .................................... AGTGAGTTCCTTTGCTTCGTCCATAGTTAC 172037 36 100.0 30 .................................... AATGTATGACTACATATGCAGTAAATGCGG 172103 36 100.0 30 .................................... ATACATTCATTTATTGCCAGCAGTTGAACA 172169 36 83.3 0 ............................TTT.TT.T | A [172196] ========== ====== ====== ====== ==================================== ============================== ================== 11 36 98.5 30 ATTTTAGGAGTATGTTATTTTGAATGGTAACAAAAC # Left flank : AGAGTATGAAAGGTTGAGTGATTTTCAGACACATTTTCAAAGTTTGCAGATAAATGCTATGGATGTATGGGAAGATTTACCGTTTGAATTTGAATACAAAGACAGTATCGGAGTGCAGGAATATCTTAAACTTCTAGGTTTAAAAATTGCAATGGGTGACAGAGATTCTAAAATCATAGATATTGTATTGATGATAATTGATGTTGTTGAATATTTTGGAATAGCAAAATTAGTTGTTTTTACTAATTTAAAACTTTATTTGTCTCAAAAAGAATTGGAAGAGGTTTATAAATACATCATGTATAAAAAAGTAATGGTTCTTTTGTTAGAAACAGGAGATGAGAAAGAATGTGTTAAAAATGAAAAAATTTTATTTGTAGATAGTGATTATGATGAAATTATGATGTATAATAATTAAATAGTAGTTGACATTCAGAGTATAGATTAGTTGCTATAGTCCCAAAAACTCCTTGTATAATGTTATAATATACGAATTTGAC # Right flank : TCCACTTCTTTGCCAAAAGAAAATTAAAGAAGCCGAAAATTAGGAAACAGATGAAAAGCCGTGTTGGAATATGTCGCAAATATAAAATGTTTGAGGTGAAACTATATGATTTTACATGATAAATATGATATAGCGGTTGACGAAAACATATGTATAGCAAAAAGGCTTTTTGTTGATGCTGTCTACAGTTCAGCAAATCTTGAGGAAATAGCGGTTACGTTTGCACAGACTCAGGATATTCTTAATAATGTAAATGTGTCAAAACTTACACCGATTGAGATAAATAAGGTATGCTGTTTGAGAGATGCATGGGAGTATATGATTGAGCATATTAATGACAGCCTTGATTTAGGATATTTAATGAATGTCCACGAAATTATTGTAAGATTTGATGTAACATATTAGTATTTAGGCAGAATAATGACTGATGATGTTATTATAAGCGGAACAAACTGGAGACCTGAAGTACATGGTGCTGAATACTATCATAAAGAAATTAT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGGAGTATGTTATTTTGAATGGTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //