Array 1 4542-5150 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVGB01000095.1 Bacillus pseudomycoides strain AFS080374 AFS080374_115_G5_Contig95_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 4542 28 78.6 37 ..C.A..T..AT..............G. AGTGAGAGGTTCCCGCATCATCTACACCACAACAGAC 4607 28 92.9 37 ..................T....G.... TACAAGTTTTTTTGTATCGTCTATATCTAAACGATCA 4672 28 85.7 36 ..........A.TA....T......... GCTCGTCCTGTTCAAACATAAGGATAGCCGTCGTAA 4736 28 92.9 35 ..........A.....C........... GGAAAAAAGGATTAATAATCGATACAGATAATCAC 4799 28 89.3 37 ....A.....AA................ CGCGTTATTTTGTGTGCTTAACTTATCAACTACATAC 4864 28 89.3 37 ..........AT..C............. AATTAATGAACGTACACTATACTGCTCTGGTTGGAAA 4929 28 85.7 37 ....C.....ATG............... TTGTCGGTTGCGTTGATGGAAGAATACTTTCACATCA 4994 28 100.0 36 ............................ GGTGATATGTGGACAGCTTTCCAGCAATATAACTAC 5058 28 92.9 37 ..........A.........A....... AATCATTTGTCCTGATTGCTCAAGATGTTCTGATCCA 5123 28 89.3 0 ..........AA....G........... | ========== ====== ====== ====== ============================ ===================================== ================== 10 28 89.7 37 TTTATATCCCGCATAGTTCAGATAAAAC # Left flank : TAACCTATGTTTACTTTCAAATTATATTATCTATAATAGAATGAAGTTCATGTTATCACAAAATATAATTCTTAAAAACATGTAAAGCACTGACATTCTAGCCATGTATTTTTGAAAAGGTTTGAAATTGTATGGCTTTTACAAAAATGAGATATAATTATTATTGAAGAGCAATTTGTAAGTCCTATTGAAATATGTGGTAAATTTACATGGGATATGAAATGCATATTCGAAAAGAGATAATGTACTAATAATAGTGCTCTTATCTCTTTTTTACTTATATTATGTAGCAATTAATTGTGGGAAAATTAAACAAACGTTTGTTTAAGATATTCGGCTCTAAAAGGATGTTACGTCTAATTTGTTCAATTTCACGTTTATTATATAAATTTTATATAACAAAGAAAAAAGCACCCGTTTTGGATGCTTCCTCTAAAAAAATTATGACCACAAGCTCTTCTTAACTGTTTCGCTAATAACAGTATTAATACTTTTAAAAA # Right flank : CCCTATCTCTATACAGATGATACACCTTATGATAGCAACATGTTACCATGTGTAGCAACCAACATTTTGCAGCGAATCATCGATTGTGTTTTTGTATTCTCTTCAAACATGCTGAAAGACCTTGTCATAGTAAGGTTTTCTGCATGTTTGGCAAAAACGAGGTTCACTGCAAAATTACGGGAATACAATTCCTGTTCCTGTTATCTTTTCTTTATCAAAATCGTACTTGCAATTTAAAGTGTGAATGTATTGAAGGCCGGGAATATCAAGTTCCTTTGTTTCGATTCCGTATCGTTGAACTTGTTTTCTAGAAATAGAAGTTGTAAGCTTTTCGATTTGCATTCGTAATACTTTTCGTTGTTTCGAATCTTTTTCCTGTTTAAATGTAGTAAATAGCTCACGATTCTCTACATATATAGAATAGGGAATAACTTGATAATTATCAATATCACGAAGCAACCTTTGTGCTTCTGTATTTCTCATATCGTTTAGTGGAAGTG # Questionable array : NO Score: 3.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATATCCCGCATAGTTCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [12-12] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 2 11882-12367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVGB01000095.1 Bacillus pseudomycoides strain AFS080374 AFS080374_115_G5_Contig95_140618, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 11882 29 100.0 36 ............................. CAATATACGAAACCTGTAAACTTAACAACTTATTTA 11947 29 100.0 36 ............................. ATTTGAACAGGTTTGTAGTATGTTTCTTTTTGCTCA 12012 29 100.0 36 ............................. TATGGTATGTATAATATCCCTATCGAAAGTGAAAGA 12077 29 100.0 36 ............................. CTATAAATAAGGCGTTGTGTACTACCTTTCTACTTG 12142 29 100.0 36 ............................. TTTGCTTTCCAATACACCTGCAAGTCTTTACTTACT 12207 29 93.1 35 .......TA.................... TATTGTTATGGCGATATAACCTATGTTGACAAGGG 12271 29 89.7 39 .C............G.............T TCTCCAATATCAGCATGTAGAATCTTTTTGTTTTTAAAG 12339 29 93.1 0 .............C.A............. | ========== ====== ====== ====== ============================= ======================================= ================== 8 29 97.0 36 GTTTTATCTGAACTATGTGGGATATAAAG # Left flank : CAGAAAACGTAAAATTCTTGCTTTTCTTATTCGGTTTATTCTCAAAGACATATAGGTTCTCTGCATATACTGTGTTTGATGCTTTTAGAGCTTCTTTGATAAAACTCACAAACATAAAACGATACGAGAGAGGGGTTACTTTGCAAGTAAAGCTTACTTTCAATCTCATCATTTTCCTCCTTAATCTTCCATATAGTATTATTATAATGTATTCAAAAATTAAGATTCAATAAATACGTAGAAATAAATGGGGAAATCTGTTCTGTGCAAATAAATTTTTTTCTTGATACCATATAGTAAAGTTAAAATCATGTGGTACTTTCATAATTTTGCAGTGAACCTCGTTTTTTCCAAACATACAGAAAACCTTGATATGACAAGGTCTTTCAGTATGTTTTAAGAGAATACAAAAACACGATCGATGATTCGCTGCAAAATTATGATTGATACACATGTTAAAATGTTGCTATCATAAGGTATATCATCTGTATCTAGATAGG # Right flank : CAACAAGAGAAAAAACCACAACAAGAGTAAAACAAAAGGAACTTGTAGTAATAACTACAAGTTCCTTTTAAGATAATGTTAATAAGACAAATTATTATTTTATTTTTTCTTCATACTGTTTAGCAAGTTTATAAAATGAAGAACGTTTAATGCCATATTTTTTCATGGCGCCTAATGCTGAAATTGAACCGGATTTCCATTCCTTGTAAGCATCCGTGAACTCTTCTGTTATTTCGACAGGCGGACGTCCTAAACGTTTACCTTGTTTTCTAGCAAGAGCAATTCCTTCAGCTTGACGTTGTTTAATATCAATGCGCTCTTTTTCTGCAAAGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGTGGGATATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //