Array 1 28301-28492 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJC01000012.1 Mammaliicoccus sciuri strain SNUC 1345 contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 28301 32 100.0 48 ................................ TTCTTACGGACATTTCTCAGAATTTTGTCCCTAACGACCTCTCTTACG 28381 32 96.9 48 ...........................G.... CCATCACGGACACTTCTCGGAATTCTGTCCCTAACGACACCCATCACG 28461 32 93.8 0 ....C........................T.. | ========== ====== ====== ====== ================================ ================================================ ================== 3 32 96.9 48 GACATTTCTCGGAATTATGTCCCTAACAACAC # Left flank : CATTATCGATGTAGGTAACACACCAGATGAGAATGGTAAATTAAAAGGTGACGTCGATTTCGAAGCTGTTAAAGAAGTAGCAAGTGCAATCACACCAGTACCAGGCGGCGTCGGTCCATTAACAATCACTATGGTATTGAACAATACATTATTAGCAGAAAAATGGAAAAACGGACTTGAATAAAATTATAATATAGAAAAAAAGCGGGACCCGATGACGGTTCCGCTTTTATTTATTGAGGTAGATAGAATGTGCTAACTTTCATTATTCTGAATTGTGGTAGTTAGAATGCTGTAACTATCATTATTTCGAATTCTGGTAATTAGAACGCTGTATCTTCCATTATTCTGAATTGTGGTAATTAGAACGCTGTAACTTCCATTTTTCTGAATTGTGGTAATTAGAATCCGCTAACTATCATTATTCTGAATTGTGGTAGTTAGAATCCGCTATCTTCCATTATTCTGAATTCTGGTAATTAGACGCGAACTCATTTAGA # Right flank : CAAAAAACACCACCCCATTATGCTGATCATAATGGAATGGTGTTTTAAATACTTATATTATACGTTTGTGATACTCATTTTTGGACCAAATGGTTCGAAGTGAACATCTGCTTGGCCAATATTTAATTTTTCTAACTCATCAAATATTGTATCCATAAATGTGATACCACCACATAAATAGATGTCGACGTCTTCATTAATCCAATTGCTTAATTCATTGCTTGTTAAATATCCATCTTTTTCTTTTAAATGATAAGTAACTTCTACATTTTCGTTCATTGCGTTTAATGCATCTACTTCTTCTTTAAATGGTACGTCTTTTTCTGCTTCATTAACATGTACGAAATGAACATTTCTACCTTTATATGCTTCATCTTCTAACATTGCTAGCATTGGTGTAACACCTGCGCCTGAAGATAATAGTAATAATTTTTTGTCTTTATCTGATTCTACTTTGAAATCACCTGCTGGAGCTGAAAGTTCAATTGTATCTCCAACTG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACATTTCTCGGAATTATGTCCCTAACAACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.70,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 293-59 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJC01000161.1 Mammaliicoccus sciuri strain SNUC 1345 contig165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 292 36 100.0 31 .................................... GAAGGTTCATTAATAGGGAAACATAACCACT 225 36 100.0 29 .................................... CTATATTTTGATGTTTCTTTGATTGCTGC 160 36 100.0 30 .................................... CTAACAATTCTTCTGTGTCATTACTTATAG 94 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : TATCTAACAATTCTTCTGTGTCATTACTTATA # Right flank : TGAAGGTTCATTAATAGGGAAACATAACCACTGTTTTAGTACTCTGTAATTTTAGGTAT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 39593-39983 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJC01000013.1 Mammaliicoccus sciuri strain SNUC 1345 contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================== ================== 39593 36 75.0 122 .....................A.AC...TAA.CCG. TTCAATAATTTAACGAAAGTTAGTCGTCAGCGCCTTTATGCTGATGGCTTTTTTAGTTATTTACATCATGATGAAAAATCACTATCATTTAATATATATTGTTAACAAAATAAATATCTGTA 39751 36 100.0 30 .................................... CGGTGTATATAAACTAAGTGAACTGATTAG 39817 36 100.0 30 .................................... TTTTGCTAAATACAAAATTTCATTATCATT 39883 36 88.9 28 ................A..C.A.............T AAAATATTTATGGCACTAGACAAGCGTT 39947 36 75.0 0 A..................AAAT...A..A.C...T | G [39974] ========== ====== ====== ====== ==================================== ========================================================================================================================== ================== 5 36 87.8 53 GTTTTAGTACTCTGTAGTTTTGGGTATAAGGTATAC # Left flank : AATCAAATATTATGAGAAGAAGACATATGTATATAAAGATATTACAGGAGACTATCCAAAAAGCAGAAATAAAGTAGTAAAACTATCATTAAAACCGTATCGCTTTGATGTTTATTTAGATAATGGCGTATATAAATTTGTGACAGTTAAGCATTTAGATGTTATCAAAAAAGAAAACTACTATGAAGTTAATTCAGTATGTTATGAAGAAGCAAAAAGATTAAAGAACATTAGTGATCAAGCAAAATTTATCGCCAGTTTTTACAATAATGACTTGATTGAGATAAATGGAGCATTATATAGAGTTATAGGTGTAAATAATGACCCGGATAACAAAATTGAAGTAAATATGGTTGATAAAAGAATAGGTAGATTATATAAAACAATAGGCGGTAAAACACAATCTATTAAAAAATATTCTACAGATATTTTAGGTAATCTCTATGAAGCGAAAAGTAAACAAGATCCTCAAATGATAATGAAAGGGTGATTTTGTCCTA # Right flank : TAGCCTAGTTTGACTAAGGTTACAATATATATTATTGTATAATTACAGTACTAATATGTATTGTACTTATACCTAAAATTACAGAATCTACTAAAACAAGGCAAAATGCCGTGTTTATCTCGTCACTTTGTGGCGAGATTTTTTTATATCCAAAATTAAAAACTCATGTAACTAGGAGTGATCATATGAAAAAGCATTATATCTTAGGGTTAGATATCGGCATTACATCAGTGGGTTATGGCATTATTGATTATGAAACGAGAGAAGTTATAGATGCAGGCGTACGTTTATATAAAGAGGCAAATGTTGAAAACAATGAAGGACGACGATCAAAAAGAGGTGCTAGAAGACTTAAGAGACGTCGTAGACATAGATTACAAAGGGTAAAGAAACTTTTATTTGATTATAATTTGTTGACAGATGATAGTGAGCTAAGTGGAATCAATCCATACGAGGCACGTGTGAAGGGTTTAAGTCAAAAATTAAGTCAAGAAGCATTT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.39, 5:0, 6:0.25, 7:-2.46, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAGTTTTGGGTATAAGGTATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 45593-47278 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYJC01000013.1 Mammaliicoccus sciuri strain SNUC 1345 contig013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45593 36 100.0 30 .................................... TGAATATGAATGGTATTAAATTTTCTTTCA 45659 36 100.0 29 .................................... AAGTTCGGCTCGTTTAACGCTTCCCTTGG 45724 36 100.0 30 .................................... AACTAACGCAAGCAGTTAACCGTATGAGAT 45790 36 100.0 30 .................................... TCGATAGCACAAGTATTGGTCAGTATGGTA 45856 36 100.0 30 .................................... TAGATCAGACGCTTTTGACAGACGTAACAT 45922 36 100.0 30 .................................... TCAAAGGAGAAATTATTATGACATCACTAT 45988 36 100.0 31 .................................... GAAGGTTCATTAATAGGGAAACATAACCACT 46055 36 100.0 29 .................................... CTATATTTTGATGTTTCTTTGATTGCTGC 46120 36 100.0 31 .................................... ATCTACATTCCACAAGTTGCCGTTAGAAGAC 46187 36 100.0 29 .................................... ACATGTTGACGGTTTGATAACATCAGACA 46252 36 100.0 30 .................................... CTCACTTATTAATGACTTATCAAACTATCG 46318 36 100.0 31 .................................... TATAGATGGACTATGACTATCGGAGATAACA 46385 36 100.0 29 .................................... ATCTATTGTTTGTACCTCACATCAAAAAT 46450 36 100.0 31 .................................... TCACGTGCTAAATCACGTAAGAAATTGTTCA 46517 36 100.0 30 .................................... GTTATTCATTCATAAAAGGTGGTTAAAACA 46583 36 100.0 30 .................................... ACAAGCTCCTCAGCGTTTAATGTGTTAGGT 46649 36 100.0 30 .................................... TTCTCGCTATAGGGCTATTTATTTGGTTGT 46715 36 100.0 30 .................................... TGTTGTATAGCTTGAGACGTATTAGCGGTA 46781 36 100.0 30 .................................... ATACACACGAGATACCAGATCACCTATTGG 46847 36 100.0 30 .................................... CACAAAACGTATCACAAACACACTGCGAAG 46913 36 100.0 30 .................................... CTAACAATTCTTCTGTGTCATTACTTATAG 46979 36 100.0 30 .................................... AAAAGAAAAAAAGTGTTTGAATATCAAAAT 47045 36 100.0 30 .................................... ACTGATTGAGCAAGCTATTGAAGAACGTAA 47111 36 100.0 30 .................................... CTGGTGAATATAAAGGTCCTTTAGAAGACC 47177 36 94.4 30 .................................G.C CAATTAACAGTGTGAAGAAAGACCATGACA 47243 36 91.7 0 ................G.......C..........C | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.5 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Left flank : ATTATCAAGCAAAAGAAAAAGCATTTGTAATCTATTTATATCCAGAAGCGGGCCTTAGCATTAAAGAACAAATAAGGTTTAGAAATATACTAAACAACTTACCTGTTCCAGTTATTGTTTTAACCGAATCACCATATTTTTTATCTGATAACCTTAAAGGACTCAATTATTTTATTAATAATGTTCAAAAGATTACAGAATCATTTTTTGAAGATAGCTATTGGAATGCACCGATTAATCTCGAAAAAGAACGAATTAAAGAAAGATTTGAATATTTATTTGTAAAATATTGTTCAGTTTTAGAAATAAAACCGATTATTTCCAACTATTTGCTTGCGGATATCATTGCTTTTAATGATATCGATCTTTATATTATTGTTTCATTTTTAAAGCATTGTAATTTAGAGTACACATTAGAAATTGATAAAACAAAAATTTCATTAGCATTATCGACTTATCTATTTTCTTAATAATAATTTGAGTTTATAATTGTGCTAGAG # Right flank : CGAAGACGAAAGAACCACAAAGGTCAGGCAGTTTTAGTATGGACCGTCTACACTTAATTAGACATCTTCTATGAATAGAAGAATTGTTGTTATTAAGAAGGTAGGGGGTCTTATTATGAGAAGCAAGCATACGGTTATGAATTTAAACAGCAATTTAATACAACGAAAAACCGCCCGATCCTGTAGCTCTCACTACAAATCGGGTGGTTATTTTTTACATCATTTAATTATTCCATTAAGTAACTGTCTTCGGCGCGTTTGATTGTTTTCTTTTTCCATGGGTCGAGTATTGGTTTAACGATAAATCCTATTGTGAATATGACGACACCAAATAATGCGAGGCATATGAGATTGTATATGAGTATTTCTGGTACGACGCCTCCAACCGCTTCTCTTAAAGCATCTACAGCATAAGTAAATGGCAAATATGGATGTATGGCTTGGAAGAATTTTGGTGTGACTTGTATTGGGAATGTTCCGCCTCCGCCTGCTATTTGTAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGGTATAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //