Array 1 83708-82459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZFA010000014.1 Escherichia coli strain 2M scaffold_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83707 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 83646 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 83585 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 83524 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 83463 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 83402 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 83341 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 83280 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 83219 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 83158 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 83097 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 83036 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 82975 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 82914 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 82853 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 82792 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 82731 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 82670 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 82609 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 82548 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 82487 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTRGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1177-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACZFA010000038.1 Escherichia coli strain 2M scaffold_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1176 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 1115 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 1054 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 993 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 932 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 871 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 810 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 749 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 688 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 627 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 566 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 505 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 444 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 383 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 322 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 261 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 200 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //