Array 1 31763-30605 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJNM01000013.1 Streptococcus oralis strain BCC50 D8860_contig013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 31762 36 100.0 30 .................................... CTAAGTTCACCAGTAACTTCTCCTTCTATT 31696 36 100.0 30 .................................... GCCTGCTGGGCGTTGGAAGAAAGACAGCAA 31630 36 100.0 30 .................................... CAAGTCATTTCCTATTTGCTGTACGCTGAT 31564 36 100.0 30 .................................... CCGATGATGCGGTTTTCTTTCAGTTCATGC 31498 36 100.0 30 .................................... GACATCCAAAAATACACTCAAGGAACACCT 31432 36 100.0 30 .................................... TTTCATCTTCAAGGTGCGAGCAGAGACTTT 31366 36 100.0 30 .................................... ACCAACCGCTAGGAATAGTACTGGTGTTAG 31300 36 100.0 30 .................................... ATATTTGGGAGTTATTGAGTATACGAAACA 31234 36 100.0 30 .................................... TTATGGTACATCTATAAGCGCTCGTTATTT 31168 36 100.0 30 .................................... CGTTAAAGGTAGAAACAATTTTTAAAGTGT 31102 36 100.0 30 .................................... GTCTATCATGAGCACGACGATAGTCACCAG 31036 36 100.0 30 .................................... TGCCACTAATTCTCCCTTCAAACGTTTGAT 30970 36 100.0 30 .................................... TTGGAGGAAAAACATGATTAAGGTTTTAAA 30904 36 100.0 30 .................................... GACTGATCAGATTATTAAATGCCTCTACCA 30838 36 100.0 30 .................................... AGCGCAACAGGCTAAAGAACTCGTTCAACA 30772 36 100.0 30 .................................... CTACCTAAAAGAAAACGGCGCAATGGCCGT 30706 36 100.0 30 .................................... TGCAGCGGCTGCAATGGGAACAACAGTTCT 30640 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAGCTCAATGACAAGCCCGAAGTCAAATCCATGATTGAAAAGCTGGTTTCTACGATTACAGAATTACTGGCATTTGAGTGCTTGGAAAACGAATTAGACCTAGAGTACGACGAAATCACCATTCTGGAGTTGATCGATGCTCTAGGGGTCAAAGTTGAAACTCTGAGTGATACACCTTTCGAAAAGATGCTAGAAATTGTCCAGGTTTTTAAATATCTTTCCAAAAAGAAACTCCTTGTCTTCATCAATGCGACCGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGGGTCTTATTTGTCGAACCTCGAAAAGTCTATGATTTTCCTCAATATGTGCTGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGGATAACAATTGGAACCTGACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGGG # Right flank : AAGCTACTCATTCTTTGAGTAGCTTTTTAGCTATTCCCCCCTACACATAGTTCATTCCCTTATAGCAAAGGAAAATGGCTAGTGCGATAAAAAGTACAGTTGCTCCGATTCGCTGGCTAGTACTGTACATCCTTCTCTCCCATTTAACTGGAAAAATAACTGCTAGAAAAGCACCTCCTACTGCCCCACCGATATGGCCTGCTAGGCTGATTCCTGGAATCAGAACACTTCCAATGATATTTATCACGAAAAGTGTCAGATAGGATTGCCCCAACTGCTGGATATAGGGGTTGCGAGTTGCGTAACGCAAGACGATAATCGCAGCAAATAGCCCGTAAAGAGAAGTGGAAGCGCCTGCTGCTACAACTTTCGGTGTGAAAGCAAAAACAAAGAGATTGCCCATCATTCCTGATAAGAGATAAAGAAAGAAGAACTGCTTGGAACCGAAAATCTCCTCCACCTGTCGTCCAAGAAAGTAGAGCGAAATCATATTGACAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //