Array 1 44859-46474 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZB010000007.1 Salmonella enterica strain FUA1998 NODE_7_length_170757_cov_33.760495, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44859 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 44921 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 44982 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 45043 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 45104 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 45165 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 45226 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 45287 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 45348 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 45409 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 45470 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 45531 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 45592 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 45653 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 45714 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 45775 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 45836 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 45897 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 45959 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 46020 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 46081 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 46142 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 46203 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 46264 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 46325 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 46386 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 46447 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62757-64654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHWZB010000007.1 Salmonella enterica strain FUA1998 NODE_7_length_170757_cov_33.760495, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 62757 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 62818 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 62879 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 62940 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 63002 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 63063 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 63124 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 63185 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 63246 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 63307 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 63368 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 63429 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 63490 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 63551 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 63612 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 63673 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 63734 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 63795 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 63856 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 63917 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 63975 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 64036 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 64097 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 64158 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 64219 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 64280 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 64341 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 64402 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 64503 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 64564 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64625 29 93.1 0 A...........T................ | A [64651] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //