Array 1 79240-82260 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHOMD010000003.1 Bifidobacterium sp. MSK.13.7 NODE_3_length_232194_cov_414.369, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 79240 29 100.0 32 ............................. ACAGCGACTTACGAAGTAACTGCCACCCGTGG 79301 29 100.0 32 ............................. GATCGTTCGCACAACCATCGTCACCATGCTTC 79362 29 100.0 32 ............................. GGACGCCCGTGACATGCTGCGCCAGATTCGCG 79423 29 100.0 32 ............................. GGACGGATTTCCCGATGCATATCCATGCCACG 79484 29 100.0 32 ............................. CACTGGGGTATCTACGGCGTGTCGCCGTTCAC 79545 29 100.0 32 ............................. CGATACAGACTACGCCGAAACGTTGAAACAAC 79606 29 100.0 32 ............................. TGCAGGATACGCGTCGCGTCACCTGCGTCTCC 79667 29 100.0 32 ............................. AATTCAATTTACGCAAAAGATACCGGAATCTA 79728 29 100.0 32 ............................. AATCAGATCGTTTGGCCGGGACAATATTGTCA 79789 29 100.0 32 ............................. ACTTCGTAACGTCCGCGACTCATGTAGGACGG 79850 29 100.0 32 ............................. TACGGGGAGTGTCAAAATCGTAGTCGTTCGTG 79911 29 100.0 32 ............................. GAAGCGCTTGCGCTCGGCCTTCGCCCTTGCGC 79972 29 96.6 32 ............................T CCATAGTCGGCGAGGCGCTGCTTCCCGTGCTG 80033 29 96.6 32 ............................T CCGCGTTCGCGACGACGAAATAGCGTCCGTAT 80094 29 100.0 32 ............................. TGTACGTACGTAGCTCGACATGCCCCGAAGAG 80155 29 100.0 32 ............................. TGTTACATTGGCGGCACGGCGACACCGGCTGT 80216 29 100.0 32 ............................. GCCCAAGTGCAGCAGACTCAAACCGTACCCCC 80277 29 100.0 32 ............................. ACCGATATCTTGACGCTCTCGCGCCCCACATC 80338 29 100.0 32 ............................. CGGCGATGTGCCGCTCTCCCCATGACGGGACG 80399 29 100.0 32 ............................. CCTTCAACACGACCAACTCCACCAGCTCATTA 80460 29 100.0 32 ............................. GTCAAGTTCACCGGCAGTGGACAGCAGAACTA 80521 29 100.0 32 ............................. TTACATTGCATGCCGAAACCAGCGTCTGCTGG 80582 29 100.0 32 ............................. GAACGGAGTTCGGCCGGCACGGCGATGCCGAT 80643 29 100.0 32 ............................. CGTTTCCGCAGCGTTGTCTGTGCCGGTTGTCG 80704 29 100.0 33 ............................. GACAAGGTGGTCTACATGTTCGCCACCAAGCTG 80766 29 100.0 32 ............................. CCATGGGCTCAAGCTGCCGGTCGACTACGAGT 80827 29 100.0 32 ............................. TTGACGCCGACTTCGTGGCGGACGTCACGGAC 80888 29 100.0 32 ............................. AGGACAGAAAACACAACAAAGCGACAACGCCG 80949 29 100.0 32 ............................. TGGAGACACTATTGCAGAAGCGGTAGCCGAAG 81010 29 100.0 32 ............................. TGCTTAACATTTTGCGCGAGTACGATCAGCGC 81071 29 100.0 32 ............................. CTTTTCACCTTTTTTGACCCCAACGTCGGCGG 81132 29 100.0 33 ............................. CGCCGTGGAATCCTATTTGCAGTGGGCTCTGGA 81194 29 100.0 34 ............................. GGGGGGGGGGGTAAGGGATTCCTGGGACAGGAAG 81257 29 100.0 32 ............................. GTGGTCACGATCTGGTCAACGCATGGAAGGTT 81318 29 100.0 31 ............................. CCCTGGAGCGTCGGAACTTCCACCCTCGCAC 81378 29 100.0 32 ............................. TGGGAGGTGGCACCCTCAAGCATGTACTTGAT 81439 29 100.0 32 ............................. ACACGTTTTAAACTGTGCAACGTCCCGTGGGA 81500 29 96.6 32 ............................A CCTCAAGCACCTGCCCAACGACCTCAAAATCA 81561 29 100.0 33 ............................. GTGCCTATCAGTTTCGCCCGTTCCAATATGGTG 81623 29 100.0 32 ............................. GTCACCAAGATCGACAAGAAGATCAAGAGCGT 81684 29 100.0 32 ............................. TCGCCGCTCACGTCGCGGTCGTTGTCGCTCTT 81745 29 100.0 32 ............................. ATCAGTCGGGGGGTTATCTTCGGGTTTTCTAT 81806 29 100.0 32 ............................. CGGAGCCGGAGCAGGAGCCGGAGTGCCGGAAG 81867 29 100.0 32 ............................. GCGGGTAGTTGCAAGCATCAGTGTAATCAGGC 81928 29 100.0 32 ............................. GGCATGCCGATGAGCCACCATGCGATCCAGCA 81989 29 100.0 32 ............................. AAGGATACGCTGCCCATGATCGTCGGCACGAA 82050 29 100.0 153 ............................. CGAGGCATGAAAAACCGGAAGCAAGCCCGCGCGAATCGGCTGTTATCTCAAGTCTGCACGGGGACTTCCGGCAATGCAAAATCATACCCCACAACCGAGAAAAGCAAGGCAACATGGCTGGATACCGAAGCAGACCAACGGAGCCGCCTGTAA 82232 29 86.2 0 ................T.........TTT | ========== ====== ====== ====== ============================= ========================================================================================================================================================= ================== 48 29 99.5 35 GTGTTCCCCGCATACGCGGGGATGATCCC # Left flank : GGGATCATGTCGGACTGTGGGATGAACGGCTGGGAGAAGTATCTGCAGGAAAATCCTATGCCGATGATGAGTGGGGATATGAGGAATGGTAGTTATTGTATTAACGGCATGCCCGGTGGGTTTACGCGGTGACCTTACTCGATGGCTATTGGAAATATCGCCAGGCGTGTTTGTGGGGCATTTGGATGCACGTGTTCGTGAAAAACTGTGGGAGCGAATCGTTGAACTCTCAAAGAACGGTCGTGCCATTATGGTTTATTCGGCTCGAAATGAGCAGCATCTTGCTTTTAAAGTGCATGGAGCTGAGTGGTCTCCGACAGACTGTGAAGGCTTGGAGCTTGTAAAACGTCCTTCTGGTCCAAAGGAAGTGTCGTTTGGTAGTGCTCTTCACCGTGGATGGAGTAATGCCAGTAAGTATCGGCAGGCGAAGAAGTATTCAAACTAAATGAAAAACGAATGACATGAATTTAGAAACCACGAAATTGCTATAATCTCTTAGT # Right flank : TAATTAAAACTTCGACCTGCATATAGCTTTCTGTCGAGCATAATGAGGGGCGCGCTTGCGATTACCGGTTGTATCTCGCTTCGGTGATCCGGATTCCTGGTGTTCGGAGCGTTGATGACGAGTCCACGGTTGGATGCAGAAAGCATAAGCGGATGGCGGTCGATGAAATGCCGGACGACAAGAAAACCTACGACATTAATTCGTGCGCGGTCAGCATGCCGACGGCGCACGACGGGAGGGGTCCGTCCTGGAGTCAAAGATCGAGCCAGTTCCCCAGCTCTTGACTGGCGATTATGTCTATTGGATAGTGTACCTCGCTTATATATGGCAGGTGTTCGTGCGAAAAGCGTCAAAAACACCCCCCCCCTTAAGTGGCTTTTCTCGAAAGGCATGTGCTATATGTAAGCGAGAAACCTCCGGTCAAGATGCCAAATCTGCCATATATAAGCCAGATATCACGGTTCAGCTCAGATGAACTGGGTGTATGTCCATGCATTTCG # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCATACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //