Array 1 125239-124079 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOL01000003.1 Nitrosomonas ureae strain Nm4 Ga0181063_1003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 125238 36 100.0 30 .................................... GTGGAAGCCGATTGATGACAACACCCCGAA 125172 36 100.0 30 .................................... TTGTATTGCGTGCAATAGCAGCCAAGCTTG 125106 36 100.0 30 .................................... TTGCCACTGCATCGCCTGCCGGATTTAATT 125040 36 100.0 30 .................................... AAGTTTAGCCATAAACACAAAAGCAGCACG 124974 36 100.0 30 .................................... TAATTTGACACCGACTCAAGTTGCCAATGC 124908 36 100.0 30 .................................... GGCACCTCCAAGTTGGGAGCTGGTTTTGGA 124842 36 100.0 31 .................................... TGATAAAGTGAAGCCGGTACATGCAATACCG 124775 36 100.0 30 .................................... TCACACACCAAAATTACTTTAACTGACTTT 124709 36 100.0 30 .................................... AATGAGTGTGTATGGTAAATATGAATTTGC 124643 36 100.0 30 .................................... ATATGCGACACTGGAAACGTTTTATCATTA 124577 36 100.0 30 .................................... TCAGCAGAGTAGTTTAGATTCTCTTCCGTT 124511 36 100.0 30 .................................... TACATTGTTGGCCATATATAAGGGTAGCGC 124445 36 100.0 31 .................................... CTCTCATGGCTTCCGGTTTTCTTGCCCCTGA 124378 36 100.0 30 .................................... TTAGAAGCCGGATGATTGCTTCATGTAATT 124312 36 100.0 30 .................................... AAAGATGAGGAAGCGCTTAATCAATTACCG 124246 36 100.0 30 .................................... AGCCGCTTTGTTTTTGTGAGAGTACAGGCA 124180 36 100.0 30 .................................... CGCTACCTGATCCACCAATGCCGCGCTTTC 124114 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 18 36 100.0 30 AGTTTAGCATATTGGGATTTGTGCTCTGACCGGAAC # Left flank : TCTCGCTGGCGCAAGTTTTTATGGGGGAAAGAAATAAAATGGACTTGCCTTTGCCAGGGCTGCCGCTCGACCTTGCTGCATCATTTCTGGAGGATTAACGTGCTATGCTTTCGGGATATCGCTTAATGTGGGTTATTGTCATGTTCGATTTACCTGTCGTTGAAAAAGCTGAGCGCAAAGCCGCGACAGATTTTCGCAATACTCTGTTGGATATGGGTTTTGAAATGTCGCAATTTTCTGTCTACATGCGTTTCTGCAGCAGTCAAAGTCAGATCGATACATATTGCACGCAAGTAGAAAAAAGCTTGCCTACAGGCGGCAAAGTCAATATCTTGCAATTTACCGACAAGCAATACGAACGCATCATTACTTTTCGCGGAAAAAGCAAACAAGCAAGCAAAAAATCACCCGAACAATATGAACTTTTCTGACAAATATCATGATTTCTTCACTGGCATGCACATTAACTCCTCTAATAATCATGGAGTTAATGTGCAGCT # Right flank : CTGGAAATAAGTGGGTTCTATCAGTGACAGTACGAGCATTCAAAATATGACTGAATCAAGCGAGCAGAGTGAGGTTAATATGAGTTATTCAGATTTATTTGAGAATGATAATAAGAATCGTTTGCAATTATAAAAATTATTGTGTAATATGCGAACTGTCCATCAGTTAGTGATTGGCATACCGCAGCAACCAGCGCATTCCCTCGCGTAGTCGGATGGTAGCAAATTACATTTCTTGTTCTTCCTTGCTGCGTGAACATAAGCCCTCACGCATCACTTGCCCGGCACATTTTCCTCTCTTCCTTTTAATGTGCCGGGTTCCTTTTTGGTATCCGTGTGGTGTTTTCAGTAACTCGATCATGATCTTCCCTGCTCTCCGGTTGGTTTCGTTTCCCGCAGATGGCCCACCAGTCCGCGTAAGATAGTTCCGGGCTGTTGCTTAAAGAGGAGTGGTTGTCGAGTGGTTCGTGGAAGTGGTGATTGAGTACAAGCTATGCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGCATATTGGGATTTGTGCTCTGACCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 117287-118527 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAOL01000005.1 Nitrosomonas ureae strain Nm4 Ga0181063_1005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 117287 37 100.0 31 ..................................... TACTTGCCGGTCAAAATTCTCACTCGTTTCA 117355 37 100.0 32 ..................................... ACATCGTTTTCAGGCAATGCCAACATGTTTCC 117424 37 100.0 33 ..................................... GTTAAATTCAAAACCTTTTCAACAATCCAGGGC 117494 37 100.0 37 ..................................... ACTTTAGGATTTTTTCTTAATTCCATACGCATAAAAA 117568 37 100.0 34 ..................................... CTCACTTTCTATCGTTATCGTTTCTGTCCATTCT 117639 37 100.0 32 ..................................... ATATTTCAACGTTACGATATTTCTTACCTGTC 117708 37 100.0 35 ..................................... CATATCGGCAGTTTCATCCTTTTTAACTGGTTTTT 117780 37 100.0 34 ..................................... GCAAGCGCACTGCTAATTTTAGCTAATGCAGATT 117851 37 100.0 34 ..................................... AGAAACAAGTAGTAACATTATTAATCGTTTGGCA 117922 37 100.0 34 ..................................... GTTAAAGACTTACTCATATTACTTCTCCACTTCG 117993 37 100.0 35 ..................................... CTGAATTGTCTGCATGTACTACACCGATTGTTGGT 118065 37 100.0 34 ..................................... ATTCAACTCTTTGATAGTTTTGTTCTGAGCTATA 118136 37 100.0 34 ..................................... GCTAACATTAGGACAATGTCTTCCTGCTTTGTGC 118207 37 100.0 35 ..................................... GACACTTGAAAAATTTGTACTATCTAACACAATTT 118279 37 100.0 37 ..................................... AAACAGATAGCTAAAATACCTATCAATGCGAGTATTA 118353 37 100.0 31 ..................................... CATCTACTTTAATGAATATTCAGCCATGAAA 118421 37 100.0 33 ..................................... CAAATCCTGGTCGCATGTGTGTGGCGACCGTCT 118491 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 18 37 100.0 34 GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Left flank : CGATCCGCAGATGCGCTTTATCGCCAACGGCGGCTGGCTTGAAATGCATACGTATGCGGCCTGTCTTCAGCTCAAACAGAAATGTGGTATTCAGGATGTGGCGTGCAACATTGTTATTCAACGCCATCCGGCAGGTAAAACTGCGGTAAAAAATGAAATCGATGTTGGCCTGATTCATGCCAACCGCTTGCATTTGATCGAGTGCAAAACGAGGCACTTTGAAAAGGATGCAGATATGCTGTATAAACTGGATAGTCTGCGTGATTTGATGGGCGGTCTGCAGGGCCGTACGATGCTGGTCAGTTTCAACAATCTCGGCAAAGCCAGCCGCGCCCGTGCCAGGGAACTCAATGTTTCTTTGTGTTGTAAAACTGAGTTGAAGCACTTACAGCAACATCTAACCAACTGGCTAACCACGCGAGGCTAACTTTTTAAAAATGAAATTTTTTGTCAACCCTCTCTATAAGCCTATGAAAAATAATGCAGAAACGAATCATGCG # Right flank : TTGTACTGCGATTGATACCCATAACCACCATATGTTTGACATGGTCAAGTAAAACCGGACAACCCAGTTAAGCAACTTTCTTTACATTTTCAATTTCTACCTCATATTGATTTGGGCTCTTGTACCCCAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAACTAAAGACCTGATTAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //