Array 1 68295-66188 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHA01000004.1 Actinomyces urogenitalis strain UMB0319 .16933_8_29.4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 68294 28 100.0 33 ............................ GCCGCCGGCCTTGTCGCCCGCCTCGCCTAGGCC 68233 28 100.0 33 ............................ CCCCATCTCCTGCAGGGCCAGCGCGTTGTTCTG 68172 28 100.0 33 ............................ ATGAGCGGCCCCGATCTGCTCGACTTCCGGACG 68111 28 100.0 34 ............................ AGCCTCATGCGATGCCTACTCCCAGCCACGGGCG 68049 28 100.0 33 ............................ TGGACGATCCTGAAGAACAAGGGCATGGAGGCC 67988 28 100.0 33 ............................ GCCTCTGCGCTGGTGGCGTCTCATCGGTGGGGC 67927 28 100.0 33 ............................ TCACGCACACAGACCGCTAGCAATGGCAGTGCG 67866 28 100.0 33 ............................ GGCGCAGCGCCAACGATCTCAGGCGGTCAGAGC 67805 28 100.0 33 ............................ CTCCGTCGCCGACCCGTCGTCGATCCTGCACGC 67744 28 100.0 33 ............................ CTGGATCGCATACGGTAAACCCGGTTACGCTAA 67683 28 100.0 34 ............................ CACCTTGTCCCGCACGATGCCGTCGCGGGGGATC 67621 28 100.0 33 ............................ CAACCTCAACAGCCAGGAACACATCGCGACGAT 67560 28 100.0 33 ............................ CTGTCCGGGATCGGGGAGAAGATCGGGCCCCTG 67499 28 100.0 33 ............................ GATTCAATCTTCCTGAGCAAGTTGGGGAGTAAT 67438 28 100.0 33 ............................ GGGCAAGGCCCGTATCTGACAGTTGAGGACGGG 67377 28 100.0 33 ............................ CGCCACCCCCGCCGCCCCCGCCACGACCCTGGA 67316 28 100.0 34 ............................ CACTCACCTACGACAAATTAGAGGGTGCTTTCGT 67254 28 100.0 34 ............................ GGACCGCACGCCCTCACTCGACTCCCACGACGAC 67192 28 100.0 33 ............................ CTCACCTCCTGGAAGGGCCCGGAAGCCAGAGAC 67131 28 100.0 33 ............................ GTTCGCCACAGACGAGCATCATCGGGATCGTTG 67070 28 100.0 33 ............................ GCCAATGCTTGCGCTCCTGATGGCACCGTCGCG 67009 28 100.0 34 ............................ CCCGCCATGGCGGCGATGAAAGCCCCGGCCCCGG 66947 28 100.0 33 ............................ GCCGTCGAAGCCCACCAAGCCGCCGGGGGCTCG 66886 28 100.0 33 ............................ CGATCTCAGGCGGTCAGAGCCACCATCAGCAGG 66825 28 100.0 33 ............................ CGGGCGGGCCTCGACCTGGCTGGGTACGGCGCG 66764 28 100.0 33 ............................ CAGGAGCGATAGGAAACCCGTTTGGAAGCGAGA 66703 28 100.0 33 ............................ CGGGCGGGCCTCGACCTGGCTGGGTACGGCGCG 66642 28 100.0 33 ............................ CGCCCTCACCTAGTTGCAGTAGGTGGGGGCACT 66581 28 100.0 33 ............................ CGCCCTCACCTAGTTGCAGTAGGTGGGGGCACT 66520 28 100.0 33 ............................ CACTGCGACGTGTATGCGCCGCCCGCGCGTGTT 66459 28 96.4 33 ................T........... CTCGTCGATGCCAGCGTCGCCAGCCTCGATGGC 66398 28 100.0 33 ............................ GACCGGACCCGCTCACCGACAAAGCACCCCGCA 66337 28 96.4 33 ....................T....... CTCTTCCTCGTCGATGTCGTCCAGGAGGGTGAG 66276 28 100.0 33 ............................ CGGCAAGCGCCGCCGCCGGTGGGTGACCGCAAA 66215 28 85.7 0 ...................A....C.AA | ========== ====== ====== ====== ============================ ================================== ================== 35 28 99.4 33 GTCGACCCCGCGTGAGCGGGGATGAGCC # Left flank : AACGGCAGTCCGTCGCAGGTGGAGCCAATTATGCGATCGGGATGGATGCATCGTGGTCGTCCTGATTCTCTCGGCCGCTCCAGCCTCCCTTCGCGGCGCCGTGACCAGATGGCTCCTGGAGGTCTCTCCAGGAGTATTCGTCGGGCGGTTGTCCGCGCGAGTGCGCGAGCACCTGTGGGAGATGGTCCAGACCTACATCGGGGACGGACGCGCTCTCCTGATCTGGTCGGTCCGTTCAGAACAGCGTTTCGCCGTAGCCTCGTTGGGGCATGAGCGTGAACCTATCGATATCGAGGGGTGCACGGTGATGCGTTCGTCCTATCGTGCCGCTGAGGGCTGGACAGCCATACCCGGAGCAGTCAAGCCGGCCAAGGAGTCCTGGTCGATCGCAGCACGACGACGGCGTTTTCGGAACTCCGCAGAACGCTCTCTAGGTCAGCAGTAAAGGAATACGGCCCACACGCTCACTGGCTTGCTTGAAGTTCCAGCGTTTTCCAAGG # Right flank : GGAGCAAATGGGCGCCTGCGCCGAGAAACGCGACCTTCCCCCCCCCCGACGTCTCGGGGATATTGCGTTGATCCCAACTGAGCCGCTCAGAGCAGACGGTGGCCGCGCAGCAATGCGCTGCGCGGCCACCGATCTCAGCCCCGTCGGAACACAGGCACCGTGAAGAAGTCGACCGCCGTGGTCACCATCTGCCCGCCGTGGAGCCTCTCACCGGTCCAGAAGTCCTCCCAATCACCCTGAGGAAGGTAGGTCTGCCACTCCTTGGCACCCGGCTGCGTGACAGGATGAACAAGCAGCTTGCTGCCGAGTTTGTACTGCAACGGGTGGTTCCAGATCTCCGGATCGTCCGCGTGGTCGAAGAACAGCGCCCGCATCAGCGGCGCTCCCCCAGCAACACAGTCCTGTGCCTCGCTGGCCAAATACGGCCGCAGCTGCTGACGGAGTGCCACAAACCGACGCGCTACCTCCACCACCTGTGGCTCACCTGCAGCCTCCGCCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGACCCCGCGTGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGACCCCGCGTGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //