Array 1 67655-68145 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000023.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 67655 32 100.0 33 ................................ ATCCATTGCCTGCCATTGAGTGTAGATATTTTT 67720 32 100.0 34 ................................ ACCCAAACGCCGCTGTTATCGACGTCGATAATGT 67786 32 100.0 34 ................................ ATCATCCCACTTGAGCTGCGTTTTACCAATATGG 67852 32 100.0 34 ................................ TTTGTCTTTGTAGATCATGAGTTCGCGGCATTCT 67918 32 100.0 33 ................................ CGTGTATCATAATTAACTCCCTAACCTTACAAA 67983 32 100.0 34 ................................ AGGTCGCTTAGCCTTACAAGGCCATGCTTTCCAC 68049 31 90.6 34 .C..C..........-................ ATCTTTGCCACATTCAGGGCAGAAAGGTACGTCA 68114 32 93.8 0 .C..C........................... | ========== ====== ====== ====== ================================ ================================== ================== 8 32 98.0 34 GTTGTGCTCCCCGTACGAGAGGGGATTGAGAC # Left flank : GTGTTTGTGCCCTTTTACACCACCAAAGCACAAGGCAGCGGCATTGGCCTTGCCCTGTGCCGGCAGATCATGTTCGCACACGGCGGCAGCATTAAACTCGACAATAACCCTGACGGGCAGGGCGCGCGGGTACGGTTGTTTTTTCCGTATTATGAACATTGAAGCTGGGTAGAACTCTGGCACAGATATATAATCTGCTTATTGAGAATCGTGATTGTCGGTAAGACGACGGAGTGGGCGTTTGACTTTAGGGCTCTGCCCCTGCTGTACTGTGCTTTGTCATTGTGTGCCTGAGGCCAATTTTCCCAGTCAATCATGTTATTTGCGCTAACCCCTGGTTCTCATAAAAACCCCGGGAGGTTAGCGCTTCTGTATGTTGATGTTTATTATGGTATTGTGTAATCTTGTTACACAAAATTCAGTTGCGTTTGGCAATTTTGACCTAGGTTAGCGCAAAAAGCCGATTTTGGCCTTGTATAATGCGGGGTTTAAAGCAGGAC # Right flank : CGAGGTCTTCATATCCCGTGTATGCGATCTGCCCTGCTGTGCTCCCCGCGTGAGAGGGGGAACGCCGCTCGGAAAAAGCACCGCTTTTTCAGGCGTGAATGGTGAAAAGTCATGCTGTTTAAGCAACGCTTAAATGACTTAGAACACTGTAGGCAGGAAGCCGAAAGCCGGTTTTGGTGATTTGCATGGACAGCAAATCAGTAAAACAGGCAATGGATGCCGATTCTGGCGAACGCGCTACTTGGCGCTTCATGGATGAATCCAAAGCACATTGTTGAAATAAGTAGCCGTGCTCCCCGCGTGAGAGGGTGAACGCCGCTCGGAAAAAGCGCCGCTTTTTCAGGCGTGAACGGTGAAAAGTCATGCTGTTTAAGCAACGCTTAAATGACTTTGAACACTGTAGGCGGGAAGCCGAAAGCCGGTTTTGGTGATTTGCATGGACAGCAAATCAGTAAAACAGGCAATGGATGCCGATTCTGGCGAACGCGCTACTTAGCGCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGCTCCCCGTACGAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4044-4276 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000037.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 4044 25 100.0 45 ......................... GACACAGTATGCTCTCCTATGGAGAATTCCCTTTCGTACCAGTGA 4114 25 100.0 46 ......................... GAGTAGAAACTATAATGACTATTATAAGAGCAAATAGTACCGGAAG 4185 25 100.0 42 ......................... AAACCCGTGCAAAACATGTAACAATCTTTTTCGTACCGGTTG 4252 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 4 25 100.0 45 CCCCGACTTTAGAGGGGATTGAGAC # Left flank : TGTCCTTGATGCGTTATTGTTTTTCATTCCTATAGCTATCTCCCTGTAGGATGGATAGCGGAATTTAACAATAAAAACATATTGCTAACAAGAGAAAAGAGTTCGTTTTGTGTCTGCAAGAGCATTTTATTAAATATTTTATAGTGAGAGGGGTCATCGTGTGAAAACCCTTGCGTTCAGACCTCGCACTTTTTTGTGAAACCAGCCTAAAACTCCATTTCCAATCAATATGCTGTGCAAAAGTGTATTTTTACATAGCAAGTGGTATATCTTTTTATTTATACAAATAAATCAATATGTTACGACACACCGCCAAAGTCAAAATCGCACTTTGTCAGTAGCTTAGATTGCATGCCGTTGAATTTTATACCTTTTACTGGTTTAAGAAGGGTTAAAATGTCAGTAAGTCAGCCGTTTTGGGAACAGCCGACAGGACATCGACATTTTTACCCCCTACAGCCCTTGTACGACGCGGCCTCGATCCGCTATAGTACCAGTGA # Right flank : CGGTTGGTTTTAAGGGCAATTGCTCTGTCTTGGGTACCGGTGGCCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGCATCGCTTTTTCAGGCTCGATGAGTGAAAATCATGCGTTTTAAAAAGCACCGCTTTTTGCATGATTTGAACACTGGAGGCAGGACGCCGTAAGCCAGTTTTGGTATTTTGCAGTAAAAGCAAAATAGTAAAACAGGCCCTGGACGGCCGATTCTGGCGAACGCACTACTTAGCGCTTCATGGATGAATCAACGATGCCGTTGTCGAACTGTTTGTTGAAATGACCCCGACTTTAGAGGCTGAGAGCCGCCCGGAAAAAGCACCGCTTTTTCAGGCTCGAAGGTGAGGCCCTGGATGGCCGAACAGGTTGGCGCTTCATGGATGAATCAACAATGCCGTTCTAAAACTAGGTGAAAAGTGACCCTGTAGTGCCATACCAAATCCAACCACCTGAATAGCGGTGTTAATATACACCTCAGAAT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCGACTTTAGAGGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 192822-192000 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000039.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 192821 29 100.0 32 ............................. TCGAAGCTGACACAGACTACTATATAATCTGT 192760 29 100.0 32 ............................. TGCCAGAGGTCTATAAACATGTGGCCAATGAC 192699 29 100.0 32 ............................. CTAATAAACTTAGCTATAATGCCATAGTTAGT 192638 29 100.0 32 ............................. GAGTTGAACAGATGGCATTACCCAGAAAACTA 192577 29 100.0 32 ............................. TTGACAGAGATATACGTGATTTAATAGCCAAT 192516 29 100.0 32 ............................. CTCAGTAACCTGTTGTTCTCGATGCTGGCCAT 192455 29 100.0 32 ............................. GCTGCAAAAATCATGAAAAACATACAAATTCG 192394 29 96.6 32 .......................G..... CTTGCGGCAACATTGGGTCTGTCACCGATGGC 192333 29 96.6 32 .......................G..... ACAACGCCAGATTGAACAGGCATTCCTCACAA 192272 29 96.6 32 .......................G..... CCCAAGAGCTGAATGATAAGCAGCAGCGTCCG 192211 29 96.6 32 .......................G..... AACTGGGGCCAGAGGCGTCGGCGCTGTTGTTT 192150 29 96.6 32 .......................G..... TCCAGTAATATCGTGGTCATGTGACCTCTTTT 192089 29 96.6 32 .......................G..... CCTGTTAAGATGCAAGTGCGAACAAACATTTG 192028 29 89.7 0 .......................G..T.T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : | # Right flank : AAACTAGGAGGTTGAAAAATCGCCACAATTCATCCGTGAAGCAGCGTCCTTCGGTCATCTCGATAATTGCTCCTGCATTATTTTACTTCCCCATATTCATGTGGGTCCATGACCTCACCTAAGCAAGCTGCGAAACGGTGTTTCGGTCTTGCTTCGCCCTTCACGAGCGTGTGGATTGAAACGTATCAGCTGAAATGGCTCTGGACCAAACCGACAACCAACGTAAGATCCGGTCTAAGTGTTAATACAATGATAGGTACAGATAATCTCTTACAAAATTGCGCTTAGAGCGGGTTAACTCCGCCTTGCAATGCTTTTTGCGATGCGACATAGTGCGGCCTTAAAAATATGAATAATAACAATATTAAGGACGGTAGGGATGAAAAAGAGCAGGTTGATGTTGGCTGTGTCGACGGCGTTGGTGGTGTTGGGCGGTTGTACTCAGCACGTCAGCTCAAGCGATAAGAGTGCGCATGCTCAGGTGCAGCACAGCCTTAAGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTACGCACGGGGCTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 760-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000115.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 759 27 93.1 32 --........................... GCGAGAAAATCGCATTGATTGTTTCGCTTGAT 700 29 100.0 32 ............................. CAATACAGAATGTATTGTGGACGTTAAAACCA 639 29 100.0 32 ............................. CCATTGAGTCGGGCGTAAACACGACGGCCCGA 578 29 100.0 32 ............................. AACCCATCATACCAAATACACCGGAGCCAGCC 517 29 100.0 32 ............................. TTCTGGCTTTCCCAATCAAAATTCGCAATTTC 456 29 100.0 33 ............................. GATCTCTGTGTTGCTATTACAGCTTTCACGTGC 394 29 100.0 32 ............................. CGACCGCACAGCAATTGTTTATGGCTGGGTTC 333 29 100.0 32 ............................. GGCAGTCGTCATAAACGACTAAAAGCCTATCT 272 29 100.0 32 ............................. GGAAAACCGGCCTTTATGTTGCCATTGGGGAT 211 29 100.0 32 ............................. CGCCGGGAGCAGGAAAAGCGGATTGACCAGGC 150 29 100.0 32 ............................. CAAATTGACGCATTCAATGCTACGCCGCAATG 89 29 100.0 32 ............................. CAGCTTTATTTCGTATCTGAGCGTAGTGGCGG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.2 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1066-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000124.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_124, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1065 29 100.0 32 ............................. GCCGCTTGAACCATCGGGGGAGCAAGCAACAA 1004 29 100.0 32 ............................. TATCAACAAATATTTAGAATCCATGGAAATAA 943 29 100.0 32 ............................. GGTCTTGGTCGAGATTATGACGGCGTGTTTGA 882 29 100.0 32 ............................. GTTGGAATAAACCCGGTTATTTCGGAGTGGTC 821 29 100.0 32 ............................. GGCCGTTTATTTGTCTGGCCCTTGTCAATCCG 760 29 100.0 32 ............................. ATCAAAACGGATCTGCCTTCTAGTTCAGATAG 699 29 100.0 32 ............................. CGCTGAAATTGACGCTCGTATCGGCCAACTAA 638 29 100.0 32 ............................. GTATCGAGGCATCTTTTTTAACTCAGGAACAA 577 29 100.0 32 ............................. GTGAATTTACATATCGCCGGCTGGGGGGAATA 516 29 100.0 32 ............................. TCTCGCAGTTTTTACGAGACGGAATTTCCTGA 455 29 100.0 32 ............................. GAGCGGCTGAACGATGCGGCCGTAGATATCAC 394 29 96.6 32 ............................T TCTCCATAAACAAAAAAAGCCCCAACCGGGGC 333 29 100.0 32 ............................. GCGACTTCGTCGCTCTGAACGACAGAACTCAG 272 29 100.0 32 ............................. GACTATACCATGACACAGCAACTAATTTTATC 211 29 100.0 32 ............................. ATTATGGCTGGTGTTAGCGAATCTATCGAAAG 150 29 100.0 32 ............................. TTGATTAACGGAACCAGCCAATCAGTTTGTTG 89 29 100.0 32 ............................. GTTTAAATGCTGATATTTCATGAGGGATTGCC 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCAGGCGCGGGGCTGAACCG # Left flank : TTTTGGTTCGACACCCTCCAGCTGATCATACTCAACGTGCTGTTCCCAACCTTGACCGCGCTGCTAGGGTACGTATTTGGTACCAGCAGGAATAATGGGGCGTAAAAAGGGTGGAAGAATGCAGGGTTTGTATGTGGTTGCAAACTTTGTACGACAAGGGCGAATTCTGGCTTGATGGCCACTTTCTCTATCTGTTTGGCTTTTTTACAACGGTGTGCTTTGCCGTAATTGAGGCTGAATGGATGCTCTTGCTCACCTCGCCGCTGGTGGCATTTTTAGCCGCGATACTGCTAGGCCTGATCTTGTTCTGTTTATTTATGGCCCTGGCTATAACTCTTTTTTCCTGCCTGTTGTGTTGCTACATTAAACAGATGCTCTTTAACAAATTGACTAGATAGCGAACAAAAATCGGAAAAAGCAGGGCCAAGTTTGTGCCCAATATTTTTGGTAACTTTTGCCATGCGATTTTTCTTTAGTGAAAACAAGTATATAATTCTAGA # Right flank : C # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 457-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000173.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_173, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 456 29 100.0 32 ............................. TAATTAGAACCGCCAGGTCTGATTTTAAATGC 395 29 96.6 32 ............................C TGAATATCGCCTGCAGTCATTTCGAGAATTTC 334 29 100.0 32 ............................. CATCAATAAACTGTCTCGGTCAAATCGGTCAA 273 29 100.0 33 ............................. GGGACAAAGGCGAGCAGGGGGAGCAGGGGGAGG 211 29 100.0 32 ............................. GTCTGATTAGTTATCTGCATTCCACAATTGGC 150 29 100.0 32 ............................. GTAAATTTACACATTGCTGGCTGGGGGGAATA 89 29 100.0 32 ............................. CACGGGATCTCGGACAACGAGGTCGTTCGCAT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 8 29 99.2 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : T # Right flank : C # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11679-10444 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUZ01000148.1 Pseudoalteromonas rubra strain S1946 S1946__paired__trimmed__paired__contig_148, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11678 29 100.0 32 ............................. CGAAACGGGCACACAGGCCCATGCTCAACGCA 11617 29 100.0 32 ............................. TATACCCGGAATTTGGTCTGGGTCCGGGTCTG 11556 29 100.0 32 ............................. GCAGCTCGAAAGCGCCTGTTTTGATTGTGGCC 11495 29 100.0 32 ............................. TAAGGGGGCTGTGCAGGATGACCCGCTTTTAG 11434 29 100.0 32 ............................. TGCAGATTCAAGGCCCGGTACATAGACCTCGG 11373 29 93.1 32 ............C.A.............. GTCAGTCCGGCCGTCGGCAATGCACCATTAGA 11312 29 93.1 32 ............C.A.............. GGATTTAACCGATCACCGTGCCGGACCTGCCA 11251 29 89.7 32 ..........T.C..A............. GTATCAATGAAATCGAAAACTTGCCACGTCCT 11190 29 89.7 32 .........A..C.A.............. CAGGGGGCCACATGCGCATGTAGACTCCCAAT 11129 29 82.8 16 ..............T.......CAC.T.. CATGTAGACTCCCAAT G [11102] Deletion [11085] 11083 29 96.6 32 ..............T.............. CACGGAGTCAGCTACTTTGCACGCACCAGCCT 11022 29 93.1 32 ............C.G.............. ACATGGCGTCCCACTTTAATCGCAGTGTGTCC 10961 29 96.6 32 .......................A..... TGTATTAAATTCAGTTGCTTACGTAGTTTTTG 10900 29 100.0 32 ............................. ACCGCTATTACGCGGCTACTCTCACATATTCC 10839 29 100.0 32 ............................. ACGCGTATGTTTGGTGATTTATGCTACCTGGC 10778 29 96.6 32 ..............T.............. GGAAACAAATGTTTCCCTCTTAGGCGCTAAAA 10717 29 89.7 32 ............T.A...........T.. CGGGTTTGAAGTGGCATTTACTGAAACGCAGG 10656 28 89.7 32 ..........T.-.A.............. TGATATATTCAATGTGTCGTTTATTGCAGTAG T [10642] 10595 29 93.1 32 ..............T....A......... GCAACGGTGCAGGTGTTTCTGACTTGGCCTCT 10534 29 96.6 33 ..............A.............. CACCTGCGCGTATGGCGTTACGTAATGACAGAC 10472 29 79.3 0 ............TAT...T....A..T.. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 94.3 31 GTGTTCCCCGCAGGCGCGGGGCTGAACCG # Left flank : | # Right flank : GCGGCTTATATGAGGTGTGGCGGCAGGGCGAGACTCGAACTCACATCATATATAAACAGCATATAACCGTTACCCATTGGAAACACTGCCGCCAAGTTTGATTATTGCTCAAGCTAACCAGCTTGTGAAGCGACACTTGGCTTTGTGAATCAAGATAATACAGTGAGTGCGTTGAAGTGGCGGCAGGGTGAGAATCGAACTCACATCACTGTAACACAGCCCCTTACCTATCGGGGTACACTGCCGCCAAAACTGATTATTAATCTCCCATCAAAAAAATGCCAGCACGATTTTTCTGGCAGTTTGTCTCAGGTCAATGACTTGCACTGTTGGTTTTGATACATTTATTTCACGATAAGTTTACCAAAGTGTTTTATGCAGGCTAAGGAAGAGCAGTATTTTCGGTATATTGAAGCGGTGTTGTTTTGGCAAGGAGAAATCCAAACTGGTACATTCCAGGATAAATTCAAGCTTTCAAGGCCCAGTGCACGGCGTTATGT # Questionable array : NO Score: 5.39 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.05, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGCTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //