Array 1 220860-220494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039647.1 Azospirillum sp. TSA2s chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 220859 32 100.0 36 ................................ TAGCGACCGAAGGTGCGCCGCGCCCACACCCCGCCC 220791 32 93.8 35 .........T.....C................ CCCAGCGAAATGCGCTACGACGAGGCCCCCGCCCT 220724 32 96.9 34 A............................... ACGCGTCGCATTTGGCCGTCCATCTCCAGTGGCT 220658 32 81.2 34 ..C..G..T..C.A......A........... TTGGCAGGCCCCACTTTACGCCGGTTTGGCGGCC G [220641] 220591 32 93.8 34 .G.....................A........ TGCGCATGATGGCGAAGGTCGATCTCGGTCTGAA 220525 32 81.2 0 .........A..T.....A..TA........T | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 91.2 35 GTTGCATCCCCTGCGGGTGCGCGGATTGAAAC # Left flank : CTGTGGACAGCGTTGGAGCGGATGTTCGACCATGATCACTCGGCGGCGCGTGGGGAAATGTCCAGCCGGCGGTTGATCGTCTTCCGTCATGACAGTGCCCTTGGCAATGCATCTCCCGCCAGCCTGTTTCAACGTGTCACGGTTCGGCGCCGGGTACAGGGGGCAACGTATGACCTAGCCAGCTCCAAGCTGGATACTCTACCGCCGGCTCGCCGGTTCGAGGACTATGTGATCGACCTTGATCTCACCAATATGCCGGCCGGGGTTGAGGCGATCATCCGGTTCTGACGACGAAGGTGATTTGGCCACTGCTCCTTGTTCAGCGCGAACCTCAAGCGCACAGCCGAATGTGGAAGGGCTCGCGTCTAACGGAGAGCGCTGAACATCTGTGCGCGAAGGGGGCGTCGTGAGCCTTTTGGCTTCCTAGCTGCCTAGTCTTCAAGGTGGTCTGCAGATTCGGTACGAATACAGTTGTTGGAATAAGAGGCTATGGTCAAGCG # Right flank : CAGTAGAGTTGAGTAGTGGCTTTTATCACCGCGTCATTCACATCTCGTATTGGCTGCAGATTCCGATGAAGCCGGCCGGGTATTCCGATTTGAAAGCGGCCACTGTTCCGAACTGAAGCCGGCCAGCGTTCCGAAGGAAAGCGGCCGGGGTGGCGTATCCCCGCGAGGCGTTTTTCGTGTCGCATGAGCATGGCGTCGGGTCAAGCCGCCATGATCATGTCGAGGTGGAGGGCGTCCCCGGAATCCATAGGAGGGCCCCGGGCAAGCCGGTCGCGAGCGCGCCTCATCACGCTGGAGAGCGGCCGGCTTGCCTGGGAGGTGCCTGTGGAGCTCCGGGGGCGCCCGGCGGTCTCGTCACTCTCCGTCGGACAGGGCTGGCTGGCGTCGCGGCTTGCGCATTGAGTCTCCGGTGAGGTCGATGCGGTAGGCGTTGTGAAGAATGCGGTCCAAGATCGCGTCCCCGAGAGTCGGATCCCCAATGAGTTCGTGCCAGCGGTCCG # Questionable array : NO Score: 3.73 # Score Detail : 1:0, 2:0, 3:3, 4:0.56, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCCCTGCGGGTGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA // Array 1 1381444-1380284 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039650.1 Azospirillum sp. TSA2s chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1381443 37 100.0 36 ..................................... AGCCAACAATCGGCGGTCACGGTCGCTGAGTTCATC 1381370 37 100.0 40 ..................................... CGGGCAAGCGCCGTCCAATCTGCGACGAAAGCGGACCACA 1381293 37 100.0 38 ..................................... GAGGATCAGGGCTACCGGTCCTTTCGGCCGCTGTGCCT 1381218 37 100.0 41 ..................................... AAGAACATGCCCAGCTTGAGATGGGCCATGTCTCCCAGGAA 1381140 37 100.0 37 ..................................... GCCTCGGCCTTCGTCGGTGTCGGCGGCGCCTTGCCCC 1381066 37 100.0 37 ..................................... AGGGTGTGGCGCGGGTAGGGGGATCGAGGAACAGCAG 1380992 37 100.0 36 ..................................... TACTGAAGGGCGTCCTTCCGCTTGGTCTTGAACTCG 1380919 37 97.3 39 ............A........................ ACTTTCCGGCGCCGGGTCATGCGAGACCAATTCCGCATC 1380843 37 97.3 37 ............A........................ TGGACTGGGCCCTGACCGTCCACTGGTCCTCTGCCAC 1380769 37 97.3 36 ............A........................ GCTCTGACGGCCCCTGTGGTCGATCCGGATAGCGGT 1380696 37 94.6 38 ............A..........A............. ATCCACGCCCGGCCCGAAGGCCTGCGGGTGGTCGCTTG 1380621 37 94.6 37 ............A........T............... GGGACGGTGACGAGGTAGGGCACCATGTGGATGCGGC 1380547 37 100.0 39 ..................................... CAGTTCCTCCATCACGGGCACGCACAGCAGGGCGGCGAC 1380471 37 97.3 35 ........................A............ ACGGCGACCCAGTGGACCATGTGGCTCAAGCCCTG 1380399 37 100.0 42 ..................................... GCGTGAAGCGTGCCCATCGAGCCGTCCTGGCCCGTGGTCATC 1380320 37 86.5 0 ...T........A.C.....C..............A. | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 97.8 38 GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Left flank : AAATCCTCAGGGCGAGGGGGATGCCATTGGCATCGACGAGGATGTGGCGCTTGGAGCCCGGTTTGCCGCGGTCCGTCGGGTTCGGCCCGGTCTCCTCGCCCCCCTTTTTGCTGGAACGCTGGCGCTGTCCACCGCCGCGCGATCCCAGTTGATGGCGTTGGCGTAGCCAAGCCGATCGAGCAGCACGCGGTGCAATCGCTCCCAGACGCCGGCTTGCTGCCATTCGTGCAGCCGGCGCCAACAGGTCATGCCCGAACCACACCCCATCTCAACCGGCAGCAGTTCCCAGGGAATGCCCGAGCGCAACACGAACAGGATACCGGTTAGAGCGGCGCGGTTGTCCAGCCGAGGCCGCCCGCCCTTCGGCTTGGGCGGCTCCGGTGGGAGCAACGGTTCAATCAGCGCCCAAAGGGCGTCGGAGACAAGAGGGGAAGCCATACACCTCTCAACAGCCCAAACGCCGTTTTGTTAGGTGCTCTAAGCCGCTCGTCCGCCAGATC # Right flank : ATCTCGTTGTGGCAATCGCTGATGCCGAGCAACCTCATCGCCCCGGCATTACGGCCCAGCCCCTCGGCGATGGCGGTCACCCACGGCTCTCCGCCGGGACTGCGCAGGCCGCGCTGGTCCGTAGCCATGCGTCGTGATAGGACTATACACCTATATCCAATCCCGGAGGCCGCGCATGGGGCCTGTCGTCCGCTTTTCGTCCTGTCCGTTTCACTGCCGGATCGGCGTACGGCCCCGTGACCTCATGCCTTGCCGGCCGCCGGGCGAGCGGCGCTGCAACACCGCCCAGCCGCTCCGCTGTTCCATCCGTTGGGCCATCGCCGGGCTCCGACGGCGGCCCGGCAACAGGTGGGCGACGAAAATCCCGTTCATCGCCAATGGCTTGGCGCCGGCCGACAGCGCCGCGCTCCACCCCGTCGCCCGCTCCGTTGAACGGATGAACAGGGTGCCGGAGTCTGTTTCACGCTGTTCCAACCCGCGCAACCCGCCCGCCGCTTCCC # Questionable array : NO Score: 3.13 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.10,-14.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1382902-1382336 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039650.1 Azospirillum sp. TSA2s chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1382901 37 100.0 40 ..................................... AGGTATTCCTGCACGAACAGCGAGTGCTGGACGCTGAGGT 1382824 37 100.0 36 ..................................... TGGAAGTCCTCATTCTCCATGGTGACGAAGAGCAGC 1382751 37 100.0 36 ..................................... GTGTCCGCATCGAGGTGCGGTACATCATCCCAGCCC 1382678 37 100.0 37 ..................................... GAGTAGGGCGGGTTGGTGACGATCCAGGGCCGGCGCA 1382604 37 100.0 40 ..................................... GTCACCGACGACGGTCAGGGTTTCCGCCTGGAGCGCGAGC 1382527 37 100.0 45 ..................................... GGCGTCCTGTCCCTTCAGGTTCCTGTCGCGGATTTCGTTCTCCGC 1382445 37 100.0 36 ..................................... CAGCATGCCGAGAATTTGCTCGTCCGACCCTAGAAC 1382372 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 8 37 100.0 39 GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Left flank : CATCCTCGGCCGTCCCGAGCCGGAGCGCGTCGGCGCCGCCACCCGCGCCCTTCTCGGCCGCCTGTCCGGCCCCTTGCCCGCGGATGCCAGCCTGTGGTGGACCCGCGGCGCCGGCCGCATCGCGCCGTCCCTGCTGTCCTGCCCCGGCCTCCCCGCCGCCCCCCGCCCGACCGCCTTCCTCGACGGCGCCTGGACCCGCTGGGGCTGGGAGAATACGGAGGAGGGGTAAGGGGGGTCGGGAGAGGGCGGCCAGCCCCCTGCGATGGCATTGCCCCCCACCCCATGCTATCCTTCCCACCGCCGCCCCGCCACCGCGAGCGGTCCGGCACAGGCGAAACCCCCGTCACCGCTCGCAAGGGCGGAGTCGTTGTTTTTCCTGGGTTCTTTGACATCGTTCAGAACGAAAACGGACCCAAGGACCTGACCGAGCCGACAGAGTCCCTCACCGCTCGATTCCAGGGCGAATCGCTGTGGACTTTGAACGGTTTGAGGGCAAGGCA # Right flank : CCAGCGTATCGGCCCTAAGAGCGCCTAACAGAACCATCTCTGGACGAATCGCCAGCAGATGAGGCTGGCGGCGATATGGTGGAAGGCGGTGAAGATATCGGCGCGCCGTTCATAGCGGACGGCGATGCGGCGGAACCGGGCAAACCAAGCGAGTGTCCGCTCGACCACCCATCGGTGTCGGCCAAGGCGCTCACTGCTCTCGATGCCACGCCGGGCGATGCGTGGAATGATCCCCCGCCGGCGTAGCGCCTGCCGGCAGTGGGCGAAGTCGTAGCCCTTGTCGGCGTGCAGCTTGGCCGGTCGGCGCCGTGGCCGGCCCGCACATTGGCGGATTGCCGGCACGGCATCGACCAACGCCTCCAGGAACTTGCTGTCATGCCGGTTGGCCGGCGAAATCCTCAGGGCGAGGGGGATGCCATTGGCATCGACGAGGATGTGGCGCTTGGAGCCCGGTTTGCCGCGGTCCGTCGGGTTCGGCCCGGTCTCCTCGCCCCCCTTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATCCGGAGCGGAAATGCTCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-14.10,-14.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 370567-370001 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039642.1 Azospirillum sp. TSA2s chromosome 6 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 370566 37 100.0 40 ..................................... CTGTGGTAAGCGGGGCGGTCACGTCGCCCTCTTCGTAGGC 370489 37 100.0 38 ..................................... ATGGTGGAACTGGAGGTGGTGGAGCGGGAGTTGGCGGG 370414 37 100.0 39 ..................................... GCGATGTTCTCCTTCAGGTTCGGCAGATTCTTGAGCAGC 370338 37 100.0 39 ..................................... CAGCAATTCCTTCAGCCGTCGCGCCATCCGCCACGCGTA 370262 37 100.0 40 ..................................... ACCGCTGATCTTCAGCGTGGCCATCAGGTGGTCGCGCGCA 370185 37 100.0 37 ..................................... GTTGGACCGAACCCCATGTACTTTCCGATGTGGTCGT 370111 37 100.0 37 ..................................... GCCCCCGGCGCCGCGGACCTCGATATGATCGAGGAGG 370037 36 83.8 0 .............-....T........C...G..C.T | T [370016] ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 98.0 39 GTCTTCCCGGGCAGAAATGCTCGGGCCTCATTGAAGC # Left flank : GATGCGTGTCGTTGATGTAGCGGGACAGCGATTCGCCGGAATCGGGCGAACGGAGGGCAATGGCGGTGCTCATGTCACATCCTCGTGCAAAGCGATATGACGGGTGCAAGGCCCCCAGATGGCAGGCCCTGGCCTCTCCGGCGGAGCAGGCGGCGATATAGTACAAAATCGGTGCTGAAAGTCAAGCGTGGTGGTCGGGTTATGGGACACGGGTATGGGTTGGAGGCGGGCGTGGTGGGGGCCAGTCTGAGGACGATGCTGGCGAGCCCCCTCAACCTGTGCTACCTTTGTTCCGCTGCCCACGTCTCTTTGCGAGCGCTGGGACGCACGCGAATCCCCGTCTACCGCTCGCATCAGGCGATCATATTGATTTCGCGAGGTTCTTTGACAAGGTGAAGAACGAAACGGAACCGGAAAATCCTAACCGACCGGTCAGGAACACGGACCCCTCGCAAACGTGGCGAATCCACATTGCCTTTCAGTGGGCTGCGGGGTAGGGG # Right flank : ACACACATGAACCCGGCGTCGTTGCTCTGATCGGGTATCGCGGCAACCCCCCGGGATGGAGGCGCCGGCCGGCGCTAATTCTGTTGCCCGGCGGGGGGTGGGGCGCTTACGGTCGCATGTCGTACCTATTGGATCTTTCCACACCGGTCCCCCTGCCCAGATGCCGCGTCCCGTGATCCGCCGCCTGATCGATGCCGTGCCGACCGCCGTCCTGCCGATGGCGGCCGGGGTGGGGCTGTCGGCGCTGGTGGCGCCGCAGCCGGATGCCGCCATGGCGCTGCTGCGCGGGCTGGTGGTCACGCTTCTGCTCACCCTTCCGTCGCTGGCGGTCGGCACCGCGCTAGGCACGGTGGCCGGATCCTGGGCGGCGGTGGCGCCGCGGTCGGCCGGCGGGCTGGTCGGGCGGCTGCTGGCCGGGGCCGGGCCGCTGTTGCCGGGATTCCTGCTGGCCGCCGTCGCGGCGCTCGCGGTGCGGGCGGGGGCGTCGGCGGCGCCGCTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCGGGCAGAAATGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-14.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //