Array 1 116184-115217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOPI010000006.1 Roseburia sp. NSJ-69 A2763_ctg006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 116183 29 100.0 39 ............................. TTTAAATTCTGCATTTATATTCTCCCTTCTGTGCAACAA 116115 29 100.0 35 ............................. GCATCTGCAATGTACTAAGCCCCTGCACATATGAT 116051 29 100.0 38 ............................. AATACTTGTGCGAATTTTATTGATGTCTTCACTTACAC 115984 29 100.0 38 ............................. ACTTTACGGGTATACACAACCTCGGTAAATTGATTATG 115917 29 100.0 41 ............................. AAGTAATATCTTCGCACAGATATGTTGTCCTAGTCAGGAAC 115847 29 100.0 44 ............................. TCTTTCCAGTATCCATGATTAGCAAGTGTTGCGTAAGCCCCTGC 115774 29 100.0 67 ............................. TTGCTTATGCCTCCACGATATCTCTAAACAGAGTGAGAAGTCTAATGACTTCTCGCAAATTGCTAGA 115678 29 100.0 32 ............................. TATCAATCAACCTCCGTTCTATACTTATAATC 115617 29 96.6 44 ................A............ TCTCTGCTCTGGGGTCATCGTATGTCTACTAAACCATAATACCT 115544 29 100.0 43 ............................. GTTCACATATAATGCCGGATAGATGAAAGCTTCACATCCGAAT 115472 29 93.1 36 ..........................TT. GATAGCGTTAAAAATTGTCAGTTCTGAATGAAGCGA A [115446] 115403 29 100.0 52 ............................. AATGCATTTGCATATGATAAATCATCTATTATTTTCACCGATGGTTTTTCAC 115320 29 93.1 46 ........................AG... ATAAATCCGTGACGGTTGTTTTGCCTTTGCAATCTTATATTTACAT 115245 29 75.9 0 ..A.........A..A.CAA......T.. | ========== ====== ====== ====== ============================= =================================================================== ================== 14 29 97.0 43 GTTTTACATTACCTATGAGGAATTGACAC # Left flank : CGGAATCGGGTTCTCAGAGGATATCAGACCGGTTGAACTGGCAAATTTGTTACATGAGGAAATGAAAAAGACAGAACCAAAGGACGAACAGGAGAAGTATCTGTTTTCCATGCTGAAGGATTACAAACCGACAGAAGAGTACGATGAACAGATGAAAGAACTGCTGCTGTGGGGAAAAGGGGAGCAGTATCTGTGGACGGTGACAGTGCCGGAGCAGGGATAGACACAGAAAAAAGTCCGTCGACCTCAAAGCCACTGTTTATAAGGCATGAGGGGATTTTTTTGTAAGTAAAATCACGGATTTATCAGGAAAAAAAAGAAAAAATCGTTCTAAAAGTCCGTCGATGTCAGTAGGTCTTTTTAAAAGAGCAGGAAATATTGGATTTATGCGGATTGCATGGTTTTTTAGAAAAATAGGTCGACGGACTTTTTTGGAAAAAATGGGTTGAAATAAGGAAAATTTGAGAGTATGATATGTAAAGAAGCTGATAAAATCAGTT # Right flank : TGAAAATATTGAAACGAGTTTTACGTTCCTAATTAATGTTTATCCCTGAACAAAGGAGGATTGACGTATGGAATTAAGTATTGGTGATGTCCTTTCAGATGATAATATAAATACTGCTATGGAATCTCTGATGGAAAAAAGAGATAGTTGTGGCGTTGATGGGGTAAAGTTATCGGAATTGCCAGTATATTGGAGCGCAAATGGAGACAGAATAAAAAAGGCGATACTGGATGGAATCTATGTACCGGGCATGATCAATCAGATTGAAATTATAAATCAAAAGGGAAAACATCGTAAGATTTCTTTGATGAATTCGGTTGACCGTCTTATTTACCGTGCATTATTTCAGAAAATGAACCTTCTTTGGAAAAATGAATTTTCTGCCTGTTCATATGCTTATCAGGATGGAAAAGGGGTATTGGCGGCTGTAAAACAGGCAGCACAATACATAGAAGAGGGGAATATATGGTGTATTGAACTTGATATACACAATTTTTTTG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 19844-18228 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOPI010000009.1 Roseburia sp. NSJ-69 A2763_ctg009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19843 36 100.0 30 .................................... AAAAAGTTATTGAAAAAGGTTGTAATCTTG 19777 36 100.0 30 .................................... ACAAGACCAATACCGGCACCAACAACGCTT 19711 36 100.0 30 .................................... CAGAGGCGAAAAAACAGACTGATGAAAGCA 19645 36 100.0 30 .................................... AAAATATCTTAAGGATGATAATAATATCAA 19579 36 100.0 30 .................................... GATATACAACATGTCAGCAGTTGAAATGCA 19513 36 100.0 30 .................................... CGAAACCGCCCGCGCGGCGGTCTGGCGTAG 19447 36 100.0 29 .................................... TCAATTTCGAATGAATTGACATTTCCCTG 19382 36 100.0 30 .................................... TAACTTCTGTCGCAGTCGCAAAATAAATAT 19316 36 100.0 30 .................................... CAGACTCACAGGCGCAAAAAAAAGTTTAAG 19250 36 100.0 30 .................................... ATACCGTTTTTAGGTATTCAGTGAATTATT 19184 36 100.0 30 .................................... CAGCTCCTCTGTTGCTTTTCTGTATTTTTC 19118 36 100.0 29 .................................... GGCATTGTGTAAGCAACCTAGATGCGGTT 19053 36 100.0 30 .................................... TTCCAGGTAACTGCTTCCCCTTCACCGGCA 18987 36 100.0 30 .................................... TACTTTAATAATACTTTCATCGCTACTGGT 18921 36 100.0 30 .................................... TGAAAATAATGATTTCCCTGGAATGCGGCG 18855 36 100.0 30 .................................... CCAGTCGGATGAGTTACGAGCAAGGGTGTA 18789 36 100.0 30 .................................... AACCAAAGGGAATCAAAACAACAGGTGTTA 18723 36 100.0 29 .................................... AATAGTGTACATTTTAATAAAAGGAGAGT 18658 36 100.0 30 .................................... TCAAGAACACTCTGTATACCGGATGGTAAT 18592 36 100.0 30 .................................... CATTCGTACACAAAATAGCTTGTGGATATG 18526 36 100.0 30 .................................... GAGTCTTAGCAAAACACAAAAAGCTGCTGA 18460 36 100.0 30 .................................... GGAAAATAGTTGATAGCTAGAGGAGTAGAT 18394 36 100.0 30 .................................... AAATGATACTTACACTTTTCAGCAACCAGA 18328 36 100.0 29 .................................... GAATATATTGCAAAAGCATTATCAATGTA 18263 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTGTAATTCCCTGTTATCACTTGGTATGATATAAT # Left flank : GCTTATCCCGAAGTTTTCGGCAGGTCTTATCCAACTGAAGCTGATAATAAAAAGCTTGTGGAAAAAGATACCCTCCACGGTAAAAGACCTGTTGGTCATAATCCAGTTTATGGTCAGAATGAAAAGCTATCTGAACAGATTTGGTTTGCTGCTCTTTTTTATATTTCAGTGTTTCCAGTCTTGCTTCTTCACGGGCCCATTTCATGACATCATCACGGGTAGGACCATGTTCAGGCAAGAGTTCTTTCAGTGTTCCGAGTTTTCGAATGATAACAGAAGTACTGACGCCTTTGTTGTTAACATAACCTTTCGAAATATAAAATGATTCTGAATTTTTTGATTTAGATGTCGTAACTCGCATATAAAAATCCTCCCATAGCTTATTATACAACACATTACAATAAAATGCAATATAGTAAAACAAGAAAATTGACGCAAAAAAAGCAGGTTTTATGCGACCTGCGAGTATATTTTCTAATATTCAACTGTCAAACTCCCGT # Right flank : AGGGAACACAAATCCCCACGAAACACAGGGATTCGTGGGGATTTCAGTTCAAAAAAATATTTAATTTCAGAGTTGAATTCTATCAAAAATCTTCTTTTTTCAAAAAACATCTAATAATTCTATCGATTCCGGGGTATCATCGAATGTCTTTGTTCCCAGCATAATTTCCATAGACTCATACTGTTTTTCTGTTAAGACCAATACACGCACCGATCCTTTTATGGGTAGATTCAATTTTAAACGTTGCTTATGCATTGCGACTGCATCCATACCATTGCAAATTCTCGAATATACAGACCACTGTACCATATGATAGCCGTCTTTCAATAAAAATTTACGAAATTTTGCGGCATCTTTTTTCTCTTTTGCAGTTACTACAGGGAGATCAAAAAAAACTAACATTCTCATAAATTTATTCATAACTATGTACCTGTAATTGCATCAATTCGGGCAACTCCAAATCGGTTCTTTTTTCCTGCAAAGCACTGCTGTAACTTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 22304-21806 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOPI010000009.1 Roseburia sp. NSJ-69 A2763_ctg009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 22303 36 100.0 30 .................................... TGCGGTGGTCATTCCGTTTTCATCGACACC 22237 36 100.0 30 .................................... CATACCCGTACCGATATTTGAAAGTATGTT 22171 36 100.0 30 .................................... CCACTGTTTCATTTTCAATGATTCAGTTGT 22105 36 100.0 30 .................................... ACAAGACCAATACCGGCACCAACAACGCTT 22039 36 100.0 30 .................................... GTCAACACCTCTTTCAATTTATTCTGCAAT 21973 36 100.0 30 .................................... CAGAGGCGAAAAAACAGACTGATGAAAGCA 21907 36 100.0 30 .................................... AAAATATCTTAAGGATGATAATAATATCAA 21841 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTGTAATTCCCTGTTATCACTTGGTATGATATAAT # Left flank : GCAACATTGATCGTACGATCAGAAAGATTCCGTTCCTTTTGAAGGATCTCAAGAAACCGCCGCTGATCTTTGTAAGAGACCTGTGAAGGCGTTTTGTGAAGGGTATTCCCGATATGATCGAGATAAGCAGAAATATAAGTCTGGTAAGATTTCATTGTATGGTCGGTAAGACCACGAAGAGAAATCATTTTTGGGTAGCGTTTTAAATAATCCATGAAATAACCTCCTGAAATAAGTGAAAGATAAAGTAACATCACAAAAACAGGTGGTGATCTGGATAAAAAATAAGATATGTAATTGTTAAGTCTAAAAAAACATGATAAAATACGCATAGCAGTTTTGGTTGTTATGTGGTTGTTTGAGTGTGGTAACTTAACAATACAACATAAATACAAAAACTGCTATTTTTTATAAAAGTGGTAATTTTTACGTAACTGGGGCTAGCCGTCGCGCTAGCGACTTGGTACAATTGGCGACAAGTACGGCGTATCAGACGGAAT # Right flank : CCTGTCTTTGACAGTTGAGTAGACTAAAACGCCTCGCAAATCCAGTGTTTATGCTGGTTGCGAGGTGTTTTGTTCTCGTTTTGAAGTATGGTAATTTATTTCCTTCCCTTACTTTTTTTCTGAATTGTTTTCATTTGACTTTTGGTAATAAGCTGAAAGTCTGTTTCAAAACCACATACCTGATGCAAAGCATCGGTTAATTTATCACGTGTGTACAGGGGCATAAATCCCTGTTCCTGTACATCGGCAAAATTCATGGTCTTGAGTTTGTCTAAAATTGTTTCACAAGTATAGGTATTTCCTAACCCCTTTTCCAGGTAACGATAGATTACTAACGCAAGAAAACAGATGAGAAAGTGTGCTTTGATACGCATATCCTCTTGGAGATATATCGGTCTGGCTTCAAAATCAGTTTTCATGATGCGGAAGCATTCTTCGATTTTCCATCGGTCTTCGCTTACTTTTAAGATATCTTTTACATCATCATCCAGAAGGTCTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //