Array 1 66602-60823 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDI01000002.1 Elioraea thermophila strain YIM 72297 contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 66601 36 100.0 35 .................................... TGGGCGACCCTGTCGGTGACCTTGACCCCAGGCTT 66530 36 100.0 33 .................................... TCGATGGCTCGCTCCATCGGTCCCTCCTCGGTT 66461 36 100.0 36 .................................... CAGCGACCCTCTGCCCAGCCGTCGATGATGGACTGG 66389 36 100.0 38 .................................... CCATCGGTCCCTCCTCGGTTCGCCCGCCGGCCCGTCCG 66315 36 100.0 29 .................................... CCTGCGCCGCCATGATGACGGCCCGCCGC 66250 36 100.0 36 .................................... GCGGATGCCGTGCACAACCAGCTGCCGGATGATCTC 66178 36 100.0 33 .................................... CGCCGAGCCCAGCGACCCTCTGCCCAGCCGTCG 66109 36 100.0 36 .................................... GGGCGACCCTGTCGGTGACCTTGACCCCCTGGCGGG 66037 36 100.0 34 .................................... GCTTGACCCCGGCGTAGGCATCCGCCAGCTTCTG 65967 36 100.0 35 .................................... GAACGCGGTCCCGATAACTGCCGCCCTTTCAGTCA 65896 36 100.0 34 .................................... CACCGGCCGCCAGAATGGCCCGGACGGCCGGCCC 65826 36 100.0 34 .................................... CCGCTCGGCCGCGTGGGGGTCGCTGGCGGCGGAG 65756 36 100.0 35 .................................... CGGCGTGACATGGGCTGTGTGAAACAGCCCGGATG 65685 36 100.0 34 .................................... CCCAAAAGAAGTCCCAAACCGCTGCCCCTATGAG 65615 36 100.0 34 .................................... ATTGTCAACGGCTTCTGTCTTGCCGCCATATCGA 65545 36 100.0 31 .................................... GTAAAAAACTTAACATCGCGGGCGGCGTATT 65478 36 100.0 35 .................................... GGGTCATCTCACTGATTGTCGCCTTCAAACGTGTC 65407 36 100.0 34 .................................... ATGGTGACGGGGGCACTATGTCAGCGCCTCTGAC 65337 36 100.0 34 .................................... GCACGGCTCTCCAAAGCCTGCCATTCCTCATCAG 65267 36 100.0 37 .................................... GCGCAGTGTCAGCCGCCATGTCGGCAACGGCGCCGAG 65194 36 100.0 35 .................................... TCATCCGCTGTTGGCGTCTCGCCGCTGGCCAACAC 65123 36 100.0 37 .................................... GCCGGAACCGACCCTCCGTATCGATGTGCTCGGCGTT 65050 36 100.0 37 .................................... ACGCCACCCGATGGATTGTGTCCCAATGCGCCAAGGC 64977 36 100.0 35 .................................... CAAGGGAACCCCTTGGTGTTCCGTGCCTCTGGCGC 64906 36 100.0 35 .................................... GGCCGTGCCCCGTTGGGCTTCAGTCCTACCGCTTC 64835 36 100.0 33 .................................... GCAAGATCGCCCGTGTAGTATCGGACCTCACCG 64766 36 100.0 33 .................................... ATGCGCCAAGGCGTAGCCATGGCGCTCAAGAAC 64697 36 100.0 33 .................................... CAATGCCAGTGTTCGGCTTTCAGCACTGGCAGG 64628 36 100.0 35 .................................... CCGGTCTTGTCGATGGTTTCGACCGGGCCGAACTT 64557 36 100.0 35 .................................... CCTGAGGCGACCAGGGCGTTTGGCGGGTCTTGGTT 64486 36 100.0 36 .................................... GGGATCCCTTGGTGCTCTGTCCCCCGCGCCCCGTAA 64414 36 100.0 35 .................................... TCCTCGAGGAACTTCTCGATTTCGGCTTGCCATTC 64343 36 100.0 35 .................................... CGCATAGTAGTCCATTCTACCCTCCTTGCCTTCGC 64272 36 100.0 36 .................................... TGCCCGTGCCCTCGTTATTGTCCGATGCCCCGACTG 64200 36 100.0 31 .................................... TCGAGAACCCAATCCCTGACCTCAGGCGGGA 64133 36 100.0 34 .................................... GAACAATCTCGGGCTCGTTGTGCTTGCTCATGAG 64063 36 100.0 34 .................................... GTAGGGGCGAAAGGGATAGTCCTCGGAGAGCCCG 63993 36 100.0 33 .................................... AGAAATCCCAAACCGCCGCCCCTACAAGCTTTT 63924 36 100.0 36 .................................... CAGGATAGCTTCTGACGGTGTGACGTGTGTAGTATG 63852 36 100.0 35 .................................... ATTTTGTTCCATGTGCGTCCTCCGCTCGGTCTGGC 63781 36 100.0 33 .................................... CAAAAGAAAAGCCCCGCACCGACTGGCACGGGG 63712 36 100.0 36 .................................... CGTTGATGACGCGCAGAGTATAGCGCTCTTCACGCG 63640 36 100.0 36 .................................... CACGGGGCTTGCAAGTTTGGGGCGAGCCCGCTAGTC 63568 36 100.0 36 .................................... CCGCGTCTGACGATGAGGGCGCGTTCAAAATCATGA 63496 36 100.0 33 .................................... AGAAACCATAACGGCCTCCTTTTCTCGATCAAC 63427 36 100.0 34 .................................... AAAAGACTACTGCATATTTTCCATCACAATTCTT 63357 36 100.0 36 .................................... AGGCCGTCTCCGCAAAATTTGTAAAAAGACACATTC 63285 36 100.0 36 .................................... CCAACTCCGGCGGCGACTGCGGCAGCGTGAGCCGCG 63213 36 100.0 36 .................................... ACTGCCCTTTCTGGCAGGGTCATCTCACTGATTTTG 63141 36 100.0 35 .................................... CCCCCGCGCATATCTGCTATGTTTTCATTGGTCGT 63070 36 100.0 34 .................................... CACTATAGCTGCCTTCAGTCTCATTTTATCTCCC 63000 36 100.0 33 .................................... GCGTGGGACGGCAGCGCGGCCAACAGCCGCGCC 62931 36 100.0 36 .................................... CCTCAAGAGTCTGAATCCTCATCTTTTCCTCCTTTC 62859 36 100.0 36 .................................... GACCGCACCGAGAAAAAGTGACGCCTCGTGGGGCGG 62787 36 100.0 34 .................................... GGGCCGACGCGGTCCCAGTGCCGCGCAAAGGCGC 62717 36 100.0 35 .................................... ATGACGCGGCCTTCGTTGTCGCGGACGGCGGTGGG 62646 36 100.0 36 .................................... AGACATCGCGCTGCGGATTGATCGCTACAAGTCGGT 62574 36 100.0 35 .................................... TCCACGATGTCGACGTTGATGAGCCGCAGGCCGCG 62503 36 100.0 36 .................................... CCAGGACCGGGCGGCGGCCACTGCCCAGCGCGGCGC 62431 36 100.0 35 .................................... TCAAGTCGCTGCTCAGTCGTCTCGTTGTCGATAGG 62360 36 100.0 37 .................................... CCACTTTCGCAACGATCATCATTCCGCACTCGCAACA 62287 36 100.0 36 .................................... CCGAAATGCTCCATGAAATGTTTCGCCTTTGCAACA 62215 36 100.0 37 .................................... CCGCTTCCCTGAAGCGGCCTTGTATTCAAACACCGGA 62142 36 100.0 38 .................................... CGAACCAGGCGGCGACCGCCTGGGCGACGCGGTCGCTC 62068 36 100.0 38 .................................... CGTGCTTGGGGTGGCTCGCGTCGAACCAGGCGGCGACC 61994 36 100.0 31 .................................... TCCTTGCCTGGTTAGACTGATGATGGAATCG 61927 36 100.0 38 .................................... CCCTCGCGCCGTGCCCAGAACTCCACCGCCATGTCGGC 61853 36 100.0 36 .................................... AAACCTTCAGCCCCACCGCTTCAAGCAGAGCCTGCA 61781 36 100.0 36 .................................... ATGATGAGATCGTCTCCGTAGGGCTCAACGGCAACA 61709 36 100.0 34 .................................... CCCGACGTTGTCGTGTATTCGAAGTTTGGAACGT 61639 36 100.0 33 .................................... GTGCCGCGCCCAAGCGATGTCGGCGGTGACAGG 61570 36 100.0 39 .................................... CACACGGCCTGGCCGACGCCATACTTTGGGCCGAGGATG 61495 36 100.0 32 .................................... CCGGCTTCGGCGATTGCCCTTGCCGCGTCTAC 61427 36 100.0 35 .................................... CCTTTGGCGCCGTAGATGGCGCGTGGGTTGCTGGC 61356 36 100.0 35 .................................... GCGTCACGCCTGGAAGGTAGCCCGCCACACGGCAG 61285 36 100.0 36 .................................... ATTTCGCGCACGTCCTCGGGAACGCCGGCCACGTCC 61213 36 100.0 31 .................................... TCGGTGATCGCCCTTGCAGCGTCCGCGGGGC 61146 36 100.0 36 .................................... CCGCTTTCCAGAGGCTGCCTTGTATTCGAACGCGGG 61074 36 100.0 35 .................................... CGACGCTCGTCGAGGGGCTTTGGGGTAGAGGCGGA 61003 36 100.0 37 .................................... CCCCGTCGGAGCACTGGATGATCCGTTGGACGACGGC 60930 36 100.0 36 .................................... TCAAATTCCAACCAGTTGACCCCCACAAAAAATTCG 60858 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 82 36 100.0 35 GTTCAGAAGCAGACCCGTTCTTCAGGGGGTCAAAAC # Left flank : GGTTGCGCGCAGCTCCTCTCTCGGCTCGCCGGCCTTCTGGCGGATGACGTCTAGGGAGGGAGGGGGTGCGTCACAGACGGGTTTGGCTCATCGGCTACGACATCGCCTCTCCCCGGCGGCTGCGCCGGGTTGCGGCGTGGCTGGAGAAGCACGCGATCCGCGTGCAATACTCGCTGTTCCTGGCGGCGTGGACGGAAGCCGAGTTCGCCCGCGTCTGGCGTGGGGTGGCGGAGCGGATCGATCCGCGTCGCGACGATGTTCGGGCTTGGCCCGTGCCGGAGCGGCCGGACGTGGTGGTGATCGGGGCGCCGTTGCCGTCGGGCGTCGTTTTCGGTGATGGACGCCATCCCCTGCTTGGTGAAATCCTGAGTGGGGGACCGGCGGCTGGGTTGCGACGCGTTCGGTCTCGGTCTGGGCGATGACGACATCGCAACGATGGCGCGGTGCTGCGACCGCCTCTTGGAGGTCTTTGACAGGGTTGGTCTTTTCGGGGCGGAGGG # Right flank : CGGAACATCAGGCTGCGCAACGCAAAAGGCTTTCCCGGTCACCAAACCGGCGGCGCCATCAAGTGATCCGCTGAACCGACGGCGCTGCGAGGCTCGGCCACCAACCCCTCCGCCACGCGCCAACGACGCTCCCGCACAGCGTGCGCAACCCGGACCCTCACGCCGCCCGCTCCGCCGCAGCGCGCCGACGCGGCGCAACGCGGTCGAGAAAGGCCGCCGCCTCGCGCCGCAGCGCCGCCACCCGGGCCGGGTCCATGCGGTCGAGCGTGCGGTACATCTGCGCCATGCGGGGGTTGGCTTCGAAGCGCGGGCGGTGGCGGGCGAGGAAGTCCCAGTACAGGAAGTTGAACGGGCAGGCCCCCTCCCCGGTCGCGCGCTCGACGTCGTGGCGGCAGCCCGCGCAGTAGTCGCTCATCCGCGCGATATACTTGCCCGAGGCGGCATAGGGCTTGGAGGCCATGATGCCGCCGTCGGCATGGATCGCCATGCCGTGGGTGTTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAGAAGCAGACCCGTTCTTCAGGGGGTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 536130-539200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDI01000002.1 Elioraea thermophila strain YIM 72297 contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 536130 36 100.0 30 .................................... CGAAATGTTCCATCATCGCGACAAATAACT 536196 36 100.0 30 .................................... ACAAAGCCCCGCACCAAGAGCAAGCTCCGC 536262 36 100.0 30 .................................... TGTCGCCCCACGGGATGGGCGCGCCGCGCC 536328 36 100.0 30 .................................... CTCCAGCCGCTCCGCCAACAGCACGTCCAC 536394 36 100.0 30 .................................... AGACTTCCGAGTGGCACGCTGCGCGCGCGG 536460 36 100.0 30 .................................... TTTCAGGTTGATCGAGCGCGGGCCGAATTC 536526 36 100.0 30 .................................... ATCCCCGAGCTGGTGCGCTACGTGCGTGAC 536592 36 100.0 29 .................................... TCCGCGCAACGTGCCGTCGGACAGCATGA 536657 36 100.0 30 .................................... CAGAACGGGAGTGTTCTTTCGAAGGAACGA 536723 36 100.0 30 .................................... GCGTCGCCTGCGGCGATGCGGGTCCTCCAT 536789 36 100.0 30 .................................... GGCAGATGACCCCTGGGTCGACGCCCGGTG 536855 36 100.0 30 .................................... GCGTCGCCTGCGGCGATGCGGGTCCTCCAT 536921 36 100.0 30 .................................... TGGCCGTGGTCGCTATCGCGGTCGGGCGCG 536987 36 100.0 30 .................................... CCGCCCGAACCGTGCCCGAGGCAGCGCGAC 537053 36 100.0 30 .................................... TTCCGGAGAGATTCACCCGGAATTGGTAGC 537119 36 100.0 30 .................................... CCGGGGCAATTGGTGGTCCAGAATGGAACA 537185 36 100.0 30 .................................... TGCGGGCATCGGCGGGCGGCGCGGGGAAGG 537251 36 100.0 30 .................................... TGATCGAGGCGGCGGCACTCGCCGCCTTCG 537317 36 100.0 30 .................................... GCCTGTCGGCGGGGGATCGTGCCACCATCG 537383 36 100.0 30 .................................... CCAATCGGGGCATGCAGTCATGAACGCGGA 537449 36 100.0 30 .................................... CGCGGCCGCCGCTTCCTGCGCCTCGAGGCA 537515 36 100.0 30 .................................... GAGAGGGATAGAGGTCGAGCACCCGCGCCA 537581 36 100.0 30 .................................... TACGCGGAGCGGCGCCAGCTGATCGGCTGA 537647 36 100.0 30 .................................... CATCGCGGCGGTCTCGTTCTCTGCCATCGT 537713 36 100.0 30 .................................... TCCCAGGCGGGGTCGCCGCTGCAAGGGGCA 537779 36 100.0 30 .................................... TTGTTTTGTTCGATACTCCCAGCCCGGCGG 537845 36 100.0 30 .................................... TGGCACGATGACAAGCGAGTGCAGCATCAA 537911 36 100.0 30 .................................... TCGGCGGTCTTGTTTTCGTCTAATCCCCAA 537977 36 100.0 30 .................................... TGGCACGATGACAAGCGAGTGCAGCATCAA 538043 36 100.0 30 .................................... TACTATCGGACTGGCACGCAGGGGAGGTCG 538109 36 100.0 30 .................................... CAGATCAAGTAGCAAACGCGTTCGCGATGA 538175 36 100.0 30 .................................... CAACGTGGTGGATCGCCAATCTTGATACGC 538241 36 100.0 30 .................................... CGAACTCGAAGATCGTGGGCGGCCACATCA 538307 36 100.0 30 .................................... GTGAAACGCTGAAAGGAGTCATGACCTATG 538373 36 100.0 30 .................................... GGCGCGGCGGCGGATGAATACGTTGCTCGT 538439 36 100.0 30 .................................... GCACCAAGGCTTCCATCTTTTCGGTGCGCC 538505 36 100.0 30 .................................... GCAAGCGAGGGCGGCTGAGATGCCGGTCGG 538571 36 100.0 30 .................................... GCCCCAGGCTCGGGCGAACGCACCGAACTG 538637 36 100.0 30 .................................... CGAGAGGATGGTGAGGGCCTCCGCCGCAGC 538703 36 100.0 30 .................................... GTGGCAGCCGCAGAGCCCTTCGGGCAGCGG 538769 36 100.0 30 .................................... TTGGCGCAGCGGGCGGCGCCTCGGCGGCAG 538835 36 100.0 30 .................................... TGGGGGTCTCGACGAAGTCGCGCCAGATCC 538901 36 100.0 30 .................................... AAGCAACATCTCATCCCGATCCGTCGCTTG 538967 36 100.0 30 .................................... TCGTCGGCCCCTGGGCGCGGCGCAAGCTCG 539033 36 100.0 30 .................................... TGCGCGCGCTCGGCCGCCTGCACGACGAGG 539099 36 100.0 30 .................................... TGCGGGCATCGGCGGGCGGCGCGGGGAAGG 539165 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 100.0 30 AGTGTAGCGATGCCCGGTGCGGCCGCAAACCGCAGC # Left flank : TTTCGGTGCCCGCCGAGTGCTGCTGCGCCTGCCGGAAAACGCGGAGGGCCTGCCTGCCGCCGACGGCGGAGATGACGGAGGGTCCGATGGCGACGCTACCCCGCCCGAAGCGGCCCCCGCTCCTTAACCCAATCGCCTGGCGCACCGTGTGGGTGTTCGCGATGTTCGACCTGCCGGTGGAGACGCAGAAGCAGCGCCGCGACTATGCCCGCTTCCGCAAGGACCTGCTGGCGGATGGGTTCACCATGATGCAGTTCAGCATCTACTTCCGGCATTGTGCGAGCCTCGATTCGGCCGAGGCGCACATTCGCAAGATGGGCGCGCGGGTGCCGCCCGAGGGCGAGGTTCGGTTCCTGGTGGTGACGGATGCGCAATTCGCCCGCATTCGGGTGTTCGCTGGAAAACGGCGCAGGCCGCCCGAGACGCCGCCGGCGCAGCTCGAGTTCTTCTGAGCTGCGCCGGCGATTTCTCCTGCCCTCTCAACAGCTTGGCCGGAGGGC # Right flank : CGGCCGGTCCGGCAGGCCGCCGGTGCGGCCCGCCAGCCCGGCAGGGCGCTCCGCGCCCCGGCAACCACGGCAGCCCTACAGCCCCTTCTCCAACACCTCGACGATCTGCCGCGTCCAGTACGGCACATCCGCCGCGTTGGTTCATGCCCGCCAGCGCAACGACAGCACGCCGTTCTCGAACAGCGGGTGCTCCTCCCACGGCTTGTAGGCCACGACGACGCGCTTCAACCCGGCCCGCAGCGCATCACGCCCCATCTCATCGCGGTCAATCGCCTTCAGCGCCTCGATCAGGGGAAGGAAGTAAATCGCGGTGAAGAACTCCGGTTCGGTGAACTGCTCGCCCTGACCGATAAGCGGCTCGACCACCACGTTCTCCCAGTCGATCTCCACCGGAAGCTCGAACCCGGCCACGCGGTGGATCTCCCGCAGCAACCCCGGCAGCACGCGCTCCTGGTAGGCCGCGATGCCGCGCCGATCCACGAGCCCCAACCTCTGCTGAC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTGTAGCGATGCCCGGTGCGGCCGCAAACCGCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.90,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [36.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //