Array 1 114730-115551 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUVD01000035.1 Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489 ST1489_0002_0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114730 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 114791 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 114852 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 114913 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 114974 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 115036 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 115097 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 115158 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 115219 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 115280 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 115341 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 115402 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 115463 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 115524 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 131684-133599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUVD01000035.1 Salmonella enterica subsp. enterica serovar Typhimurium str. ST1489 ST1489_0002_0008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 131684 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 131745 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 131806 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 131867 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 131928 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 131989 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 132051 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 132112 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 132179 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 132246 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 132307 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 132368 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 132429 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 132490 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 132551 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 132612 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 132673 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 132734 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 132795 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 132856 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 132918 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 133021 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 133082 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 133143 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 133204 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 133265 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 133326 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 133387 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 133448 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 133509 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 133570 29 96.6 0 A............................ | A [133596] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGCCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //