Array 1 23701-23211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPK010000015.1 Clostridium sp. CCUG 7971 CCUG_7971_contig_0000015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 23700 29 100.0 37 ............................. CAAAGTAAATTTTCAATTAATGCATGGAAAAATTATC 23634 29 100.0 36 ............................. TCGCCGACACTTTTTAACCCTTCAAAATATGAAGGT 23569 29 100.0 37 ............................. TTAATCTTTATATTACATTATATGCAAGACTAGCTTA 23503 29 100.0 37 ............................. TCGAGATATCTAAGTGTTATTAGTTCTGTTTCATTAT 23437 29 100.0 37 ............................. AAAAAAGAATTAGGTATGGCTAAAGGAATTAGTTATC 23371 29 100.0 37 ............................. TTACGAGTCCGTTATATTATTAATTTGTAAAAGAACT 23305 29 89.7 37 .........T........A......A... AATGTCATTCCAGCCATTTCATAGTCTTTTGCATAAC 23239 29 89.7 0 .........T.............A.A... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 97.4 37 GTTTTATATCAACTATGTGGTATGTGAAT # Left flank : ACTATGTGGTATGTGAATGTTTCTGATATAAAATCAAATGCTAAAGGTTTCTAT # Right flank : TTAAAAACTAAATATATATTTAATTAATTATGTATATTTTATAAAAGACTTAGAAATTCTAAGTCTTTTATTTATTACAAAATACTATATAACTTAAATTATCTACCTGTAAACTCTAAGTATTTTTTAATAGTATATATATATCTATTATTTATTGCCATAGTTGCTTCATTTAAGTTTAATATTCTGAAGAATGGACACGCTTAAAAATAAGAGGTGGAAATATGGAATTGTTGAATGTAATATTGAAGAGTTTTAGCAGACTGGTTCTAATCATAGATATAGCATTATTTATAATTTTATTAACATTATATTTTAGTTTATAAAAAGAAGGTAGCCGTTGGGAGGCTACCTTTTATACGGTTTAGACCGAAAACTCCTAATATATCCTTATTAGGTAGGGTTGATAATTAATCTCTTGATATAATTATTTACCCAAATGTTTTAAAACTAAATCTAAAGTTTCAAACCTATTTTTACCATCTAAGAATGTACACTTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATCAACTATGTGGTATGTGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [90.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 30432-28230 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPK010000059.1 Clostridium sp. CCUG 7971 CCUG_7971_contig_0000059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 30431 29 100.0 36 ............................. CCATCTTTTTTACTTCTTTGTTCGGCACCTGTAATA 30366 29 100.0 37 ............................. TCATCAGTTAAAATAACACCCGCACCAACAGCAACAG 30300 29 100.0 37 ............................. GGTCATGGTAAAACTATTTCTATGACTTATGAATTAA 30234 29 100.0 37 ............................. GGGATTTTACTTGCGTCCTCTTGTAAATTCCAAAACT 30168 29 100.0 37 ............................. TAAAAAATACCTCCTAAAATTTATATTTCATATAATA 30102 29 100.0 36 ............................. ATTAAAAAAGTAGCAACTTCAGCAGGAATTACAAAA 30037 29 100.0 36 ............................. CTTTGTATAGGCTCCTTATATTGATAAACTTCCAAT 29972 29 100.0 37 ............................. ATTTTTTATATTTATTAAAATATCTTTACATATTACA 29906 29 100.0 37 ............................. TCTTGAAATTTACCATTTATAATATTTCTTCTAAGAG 29840 29 100.0 36 ............................. TTTTGCAATTATTACAAAACTTATCTTTACAAAGAT 29775 29 100.0 36 ............................. CAAGTAAGCACTTCTAACTTGAACTAATATACGAGG 29710 29 100.0 37 ............................. AGGCAGTGGAATGATAAAAATAGACTTGAATGGATTA 29644 29 100.0 38 ............................. TCGACTTCAACCTGTACATTTTTTAATGCATCTAACTT 29577 29 100.0 37 ............................. CTTTAAAAGAACCCTTGTAAGTACTAGCAACTGATGA 29511 29 100.0 36 ............................. CAAGGATACGGACGTCTACGTATAAATGAATACTGT 29446 29 100.0 39 ............................. CAACTTTAGTAATGCTTACTTTTCTTTTGCTAGTTTCCA 29378 29 100.0 39 ............................. CTGATGTTCCTTCTCTTGATTTTAGTAAATTAGATTTAG 29310 29 100.0 37 ............................. TGAGAATTTTAGCAGTATGTGATGCGATACCTCTTTC 29244 29 100.0 36 ............................. ACATATCACCTACTTCATCTTTTAAGATGTTAGGTT 29179 29 100.0 37 ............................. TTTGTTCTTTCATCTGTGCAACGAACTCTGGATGTTC 29113 29 100.0 37 ............................. TGGCTTATCGGTACGACAAAAGAAACAGAATTGTCAA 29047 29 100.0 36 ............................. AATGTTGGTACAAGTAATAGTCCCGAACCGGGTAAA 28982 29 100.0 36 ............................. GAAAATGGAAAAGTTCTTTGTGTGTACTGTAAGAAA 28917 29 100.0 36 ............................. AGATACGTATACAGATGGAACATTCAAAGATTGTTG 28852 29 100.0 37 ............................. TTAGCTTGTATAATATCATTAATAAACAATTGAACAG 28786 29 100.0 37 ............................. AATAAAATGGCAATTGAAAAATACAATCTCGAAACTA 28720 29 100.0 37 ............................. ACTATCAGTAGGTAATATAGGTATACTTTTAGGAACG 28654 29 100.0 38 ............................. AGTGTATTTTTCATTTATATATTCCTCCTCTTAAAACC 28587 29 100.0 36 ............................. GATGTAGTAGTACATAAGGGAGATAATTTAGAACTA 28522 29 100.0 37 ............................. TCTAACAATGGTTTTAGTTATATACATGTTGGTTCAA 28456 29 100.0 37 ............................. TTTTATCATTGACATATTTTCTTCATAGTCAATTTTA 28390 29 100.0 37 ............................. ACGGCTATAGTAGATGCTATTAATATTCCTGCATCAC 28324 29 100.0 37 ............................. AAAGAACTTGAAAAAATACTTATAGAATCTCAAAAAG 28258 29 93.1 0 .................C..........T | ========== ====== ====== ====== ============================= ======================================= ================== 34 29 99.8 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : AACATTTTATTAAAGATGAAAAGTATAAAGTTTTGAAGGCGTGGTGGTAGTATGTTTGTTATAATTACTTATGATATTGTAGAAGGGAAGCCTTTAAATAGGACTAGAAAGATACTTAAGAAATATTTGACTTGGACTCAGAACTCTGTTTTTGAGGGAGAGATTACAGAGAGCAAGTTGCAAAAATGTATGTGTGAAATAGGTAAGGTTATAAATAAGAGTCAGGATTCTATATATGTGTATGAGGTTAAAAATCCTAATAATATTAGTAAGAAATCTTATGGAATACACAAAAATTTTGAAGAAATGTTTTTATAATTTGCAGTGTACGTAAATTATGATAAACTATATTATAACACTTGAAATAGCTAAGGTTAGAGTGATATAAATTAAGTTAGGATATGCAGCACTTGAACTTCACTGCAAAAAATATAAATTTTATTCAAATATGAACCGTAAAATAAAGCTATTTCAATATGTTTAAGTCTAACAAAAATAGG # Right flank : TATAGATATAATCTTATCATAAAATTTGAAGGGGATTTGTACCAGTTTGAAATTGTTGAGGTTCAAGATTAAAATATTACTTATAAAATACCCTGGGTCTTAAAAACAGACCCAGGGTTATTTTTATAATTAATACGACCTAGCCCTTTAAGTATTTAGCACTCAACCCATCATTTATTATATAAATTATACAATATCTTTAAGTATGGTAAAATAAGTAATACAATTAAAATAAAAGGACAATTTAATTATTAAGTTTATGGGGTGATATGAAATGTTAAAAATGATTAACTTATCTACATATAATTATGATATGGAAAGATACAACAACAACTATGAAAATATAAATAAATTCTTAAAAAATCATAATATAGATGCAATAGAACTATTTGCACCATTAGGATATAGTGAAGAGCTAATACCTAAAAATAAAATAAAAGGAATACATTTAAAGCACTTTCCTACTTGGTTAGATTTTTGGAATGGAAATAAAAAAGGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //