Array 1 389-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYN01000038.1 Actinobacillus pleuropneumoniae S8 contig39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 388 28 100.0 32 ............................ TCAAAGCGAAACGGATTGCCATGAATATCTAA 328 28 100.0 32 ............................ TTCCACGATGATTTAGCTGCTTTGATTAAAGC 268 28 100.0 32 ............................ TTTGATTTGAAACTGGTCGAGAACGCTAAAGA 208 28 100.0 32 ............................ AAACAAGAACTACAAGAATATTTTGACTCACT 148 28 100.0 32 ............................ TTTGAATCGAAACCAAACTTATTTTTAATCTT 88 28 100.0 32 ............................ GAACGTAAAATCAATATGTGCTATGACCTATT 28 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAACACAATTAATAGGAGAAGGTTTACAAGACTATGTGCTTATTACATCGGTAACACCTGTACCGGAAGAAATAGTCGAATACCACCGTTACCAAAGGGTACATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGCAATTTTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : A # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 32-658 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALYN01000062.1 Actinobacillus pleuropneumoniae S8 contig64, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32 28 100.0 32 ............................ TGACCAAAGCTGGCGTGATTTTTACGGTAGCA 92 28 100.0 32 ............................ TCTTTAAATCGGGTTTAAAGTGCGGTCAAATT 152 28 100.0 32 ............................ ACTTTAAATCGGGTTTAAAGTGCGGTCAAATT 212 28 100.0 32 ............................ ATTAAATAAAGAGAGGAAAAAATGAGCAGTAG 272 28 100.0 32 ............................ ATAATGAGACCTTTTGACCGCCGTAACAAGCG 332 28 100.0 32 ............................ GTCGAACTCTTGATAAACTTGTGCGTCTCGTA 392 28 100.0 32 ............................ AATGCACATTAGAAAAAACAAGGTTAGGAAAA 452 28 100.0 32 ............................ AAATAATTTGTCTTAAACCGGCATAAATTACT 512 28 100.0 32 ............................ AATGCACATTAGAAAAAACAAGGTTAGGAAAA 572 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 632 27 89.3 0 .....................-C.C... | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTTGATATCCACGCAATTTGACGGATTTCTTC # Right flank : ATCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAAATCGGTTGTGACTTTTTTAGCCCTCAAAGTGAATATCGCCCCGTCGAATATCTACAGCAATGGTGTCGCTTTTGGTTTGACGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //