Array 1 60115-59476 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQM01000021.1 Escherichia coli strain MOD1-EC6846 MOD1-EC6846_21_length_65952_cov_45.5409, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60114 29 100.0 32 ............................. TTAATACGGCGGTTGGCACTCGAATTAAAAAA 60053 29 100.0 32 ............................. TCGGGGATCGTAGAGTTTTTTACCCCAAACCT 59992 29 100.0 32 ............................. CGTATAAAATCTATGCGTTTTTTACGCCATTA 59931 29 100.0 32 ............................. CACCAGGGCAAAACATGGACAGCATCGGCGAA 59870 29 100.0 32 ............................. GAGCTGCGGAAATACGCGCGGGGGGCGAAAAA 59809 29 100.0 32 ............................. AATGGCCGGGTGGTGATGGGTTCCCGTTCACT 59748 29 100.0 32 ............................. CTTATAACCGGCGGCAAAAATCGTCGCGTTGG 59687 29 100.0 32 ............................. AGATTGGTTTTCCAGTCTTTGGCGGTTGGCAA 59626 29 93.1 32 .T..........C................ CTGTGCCGGTAGCCCCCTCCCTGTTCAGCCTC 59565 29 93.1 32 .T..........C................ GGTAAAAACACGGTCTGAACCGACATTCATGT 59504 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.4 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGTTGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 122523-122725 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQM01000001.1 Escherichia coli strain MOD1-EC6846 MOD1-EC6846_1_length_195395_cov_43.7988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 122523 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 122584 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 122644 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 122700 26 85.7 0 ................A...-A..-... | ========== ====== ====== ====== ============================ ================================= ================== 4 28 96.4 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATGCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2936-1074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOQM01000019.1 Escherichia coli strain MOD1-EC6846 MOD1-EC6846_19_length_88099_cov_43.9215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2935 29 100.0 32 ............................. CGTAGATCTAAATCTTCTTTTATTTCATAACC 2874 29 100.0 33 ............................. TGACGAGTCGAAACCGGTTATCTGTAATTGCAC 2812 29 100.0 32 ............................. CGACGTTTTCCAATATCACCCAACAATCAATT 2751 29 100.0 32 ............................. CGCCGAGGCTCACTGCGCTGTAATCACAAATG 2690 29 100.0 32 ............................. CTTCTGCATCTCGTCAACCTCCCTAAATGCCT 2629 29 100.0 32 ............................. CGCCACCAGCGATAGAGCCGCAAACAGAGCCG 2568 29 100.0 33 ............................. GATATGGCAATGAGTAAATATACATATTTAAAC 2506 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 2445 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 2384 29 100.0 32 ............................. CGCCCCTTTTTCAGATCCAATGCTGCAGGCGT 2323 29 100.0 31 ............................. CGTCTCGAGCGCCGGACGATTCAAAACCAGC 2262 29 96.6 32 ............................C AGGTCCTCGTCAGATACAGTAGTCACAACACC 2201 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 2140 29 100.0 31 ............................. CGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 2079 29 100.0 31 ............................. CGACCACGCAGAGCGGCGACAACCTGACGTT 2018 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 1957 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1896 29 100.0 32 ............................. TGGCAGGCCGGTAATATGAAAACGACAGAGCA 1835 29 100.0 31 ............................. CGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 1774 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1712 29 100.0 32 ............................. CAGTTGAAGCGCTTTAAAAAATTCTGGACGGC 1651 29 100.0 32 ............................. AGATCGACATGAGCCGCCGCGCGACGAATAAC 1590 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 1529 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 1468 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 1407 29 100.0 31 ............................. TGTTTGCGGCATTAACGCTCACCAGCATTTC T [1379] 1346 29 100.0 31 ............................. CGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 1285 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 1224 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1163 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1102 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //