Array 1 109-803 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSA01000094.1 Pseudomonas aeruginosa strain PA_298 NODE_94_length_10663_cov_31.309, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109 28 100.0 32 ............................ TTTTCGACCGACGCGATGGCACAAGCAAACCT 169 28 96.4 32 .............C.............. ATGTAGTTGCCCTGCATGTTGATTTGCGTGGC 229 28 100.0 32 ............................ TATGACCCGTCGTACGACTACGCCTCGAACAC 289 28 100.0 32 ............................ AATTCACCTGCTGCGGCATTCCGAGCGACAAC 349 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 409 28 100.0 32 ............................ AGTCCCTGGGCAAGCGCCTGATGCCCGGCGTA 469 28 100.0 33 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 530 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 590 28 100.0 32 ............................ ATAAACTTCGGTTCCGTAGAGCGCTTCTCCGG 650 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 710 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [722] 776 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAACTCGCCAGCAGCAGCTGAAGCAGGAAAAATTAATATCAACCCCAGGGCCTACTAACTAGGCAGCGGTACTAAAGCTGGGGGCAGGTCACAGGTCAAGGCCATGCG # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10317-9327 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSA01000094.1 Pseudomonas aeruginosa strain PA_298 NODE_94_length_10663_cov_31.309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10316 28 100.0 32 ............................ AGTTGCTGCTCGAACAGTGTGAGCCAGACGTG 10256 28 100.0 32 ............................ TGGCCCAGGTAGGTGGCCCAGTCCTGACCCTC 10196 28 100.0 32 ............................ TGGAAGTCCCGCACCGAGATCGAGGCGTTCAT 10136 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 10076 28 100.0 32 ............................ TAGCCAGATTGCTGTGCGGCGACGGTTCATTC 10016 28 100.0 32 ............................ TGACTCTGCACGGTGTCGCAGATTGACACCTC 9956 28 100.0 33 ............................ AGGAACACGCTCGAAGTGTCCAGCACCCTTGGC 9895 28 100.0 32 ............................ ATCAATCGCTTGATCCCGTCTCGCATGAATGT 9835 28 100.0 32 ............................ AGTGCGGTCAGACCATTCACGCCACACTTGCT 9775 28 100.0 32 ............................ ACCCTTGCGCGCAGTGCTGCGACTTCCTCCGT 9715 28 100.0 32 ............................ ATGGCGTGCAGATCGTCGAGGAACGGCTGCAT 9655 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 9595 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 9535 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 9475 28 100.0 33 ............................ TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 9414 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 9354 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCCCCCCCCCCGGCGCGTCGCGGCCGCGCCCCCCCCCCCCCCGCCCCCGCCCCCCGCCGCCCCCCCCGCCCCCGCCCCCCCCCCCCCCGGCGCCACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96578-95830 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSA01000002.1 Pseudomonas aeruginosa strain PA_298 NODE_2_length_384466_cov_29.9788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96577 28 100.0 32 ............................ AAGCTGCTCGAGGAAAACGCATACCGCGAAAT 96517 28 100.0 32 ............................ CAGCGCTTGTAGCGCCTTGACTTTGACCTCGT 96457 28 100.0 32 ............................ AGTTGCCACCACCACACGCGGTGGAGCAGCTG 96397 28 100.0 32 ............................ TCATTGCAGTAGCGTAAATATATCTGGAGGAC 96337 28 100.0 32 ............................ ACGGTCTGCCCGCTGGAACTGTTGAACCAGAG 96277 28 100.0 32 ............................ TGCAGGAAAATTTGCTAGCACTTTTCGACCTG 96217 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 96157 28 100.0 32 ............................ TGTCCCAGGCGCAGATACACCTGCCCGTCCAG 96097 28 100.0 32 ............................ CGCTTGTGGTCCAGCGACTGGCCCTTCGCCGG 96037 28 100.0 32 ............................ TGATCGCGGTAGCGTGGTCCGATCACCTGGGC 95977 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 95917 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 95857 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCCGCCGAGAAGCGGCGGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36363-36810 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHSA01000051.1 Pseudomonas aeruginosa strain PA_298 NODE_51_length_36999_cov_23.881, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36363 28 100.0 32 ............................ TGATCGACCAGGACTGCCTCGCCTTTGGCCGG 36423 28 100.0 32 ............................ ATTGTGGGTCGCCAGCTGCAGACGTTCACGAC 36483 28 100.0 32 ............................ AGTGGGAAGCCATGGTGGCAGAGTCTCAGAAA 36543 28 100.0 32 ............................ GATCAGGCTAGCCATGACGGGCTCCATTACGC 36603 28 100.0 32 ............................ ATCATGACCCAGTTCAACATCATCACCAGCGA 36663 28 100.0 32 ............................ ATCAAGGGGCCGAGCGTGCCGCGCAGCCTGCT 36723 28 100.0 32 ............................ AGGAGTACATGCCGAGGGCGTCTGTGACCATA 36783 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TCGGACTCAGGCGGACTTGCGCCAGGCTGACCTGCCCCCCGATTTCAGTACCACGTCAAACTTAGTAGAGTCCGTTTTCCGAGCAGGAGACGGCAGTGAAAAAGCGTTTTACCGAAGAGCAGATTCTCGACTTCCTCAAGCAGGCGGAGGCCGGTGTGCCGGTGAAGCAACTGTGTCGCCGACACGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //