Array 1 888703-887835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFN010000002.1 Pectobacterium brasiliense strain IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692 IPO3540_002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 888702 28 100.0 32 ............................ GAAAACGGCAGGCCGAAATCAGAAAAAAGCCA 888642 28 100.0 32 ............................ GCAGCGTCAATAAACTCGCGGGCCATCTCTTT 888582 28 100.0 32 ............................ GATAGCGTAAATGCCATCCGGTCACAGTTGCT 888522 28 100.0 32 ............................ GCCGTTCGCCTCGTCGTTGACCGTGAGCGAGA 888462 28 100.0 32 ............................ ATGCCCGCGCTTGTCGCAGCTTCTCGAACATA 888402 28 100.0 32 ............................ GTTGAAGCTGGCGAGTTTGAAAAGAAGCAAGC 888342 28 100.0 32 ............................ ATGCGAAAACGTGGCGGAAGATAAAGAAAATT 888282 28 100.0 32 ............................ TTGCTCACTAGCCATTTTAATTGCGTCAGCAA 888222 28 100.0 32 ............................ TCGGAATTTATTAGAGCCATTAAATTTAATAA 888162 28 100.0 33 ............................ GTTAAAGCTGGATGACGGGAATTGAATGTAGGT 888101 28 100.0 32 ............................ ACCCGCGGCTTTGATGTTCAACAGCGCCCACA 888041 28 100.0 32 ............................ CTTACTGAGATAAAAAAAGGCGATAATATAAT 887981 28 96.4 32 ...........C................ TATTGATGACGTCAATGTTTGCCTCTTGAATC 887921 28 96.4 31 ...........C................ CGCGTCGGCGGGATTTTTTTGCAGGAAGAAA 887862 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTTACAGAAGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAGTAAATCGCAGGCTAACCATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGTCTATTTCACAAGCTTAACAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CGCCTTAAGTGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTGTTTGATGTGTTATCGCCTTTAAATAACGTATTTTTGATTCCCTTTTCTCGTGACATTTTTAAGTAACGGGTTTCTTTGTGTGGGATGGAAAATTGCGGATTTGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAACCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACACTTGTTGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCCATC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 897276-897842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACGFN010000002.1 Pectobacterium brasiliense strain IPO:3540 CFBP:6617 ATCC:BAA-417 IBSBF:1692 IPO3540_002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 897276 28 100.0 32 ............................ GCATTATTCACCGCTGGCAACCACTGTATTCT 897336 28 100.0 32 ............................ GTTACCCCGTCTATGCAATTTCAGGATCAAGA 897396 28 100.0 32 ............................ GATGCGGTTGCGCTGGGTATGGCGACTGATGC 897456 28 100.0 32 ............................ ACGTTGATTCCTGATGGATTTGCGCCGCGAAA 897516 28 100.0 32 ............................ CATTAGCTCTGATGATTCATCGGATAGGTCGA 897576 28 100.0 32 ............................ ATACCCCGTGTGATTAAGAACATCTTGATATC 897636 28 100.0 32 ............................ GGCAAGACGCTTTGCTCTAACCATTCCTGCAT 897696 28 100.0 32 ............................ TAACGACTTCAGTGACCGGCCGAATGACACGC 897756 28 100.0 32 ............................ GCGATGATGACGAAAAGATAATGAGGAATAAA 897816 27 92.9 0 .......................-..T. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCGACGCTCGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAATCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACAGAGGCGGAAGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTATAGAACATGGCCCGTTACAGGATGCTCCTGTCGCAGGACGCTTTTCCTCCTATGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGTTGCAACCCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGACAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ACTATCGAAATGCGTCGCTGGTGCGACGCATTTTAGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGACGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGGCC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //