Array 1 579984-577864 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXY01000007.1 Oharaeibacter diazotrophicus strain DSM 102969 Ga0244730_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 579983 37 100.0 39 ..................................... AAGGAAGAGCAGCGCCGCGTGTCCAACGCAGTGTCCGGC 579907 37 100.0 36 ..................................... GACCCAGAGGCCGGCGTGGAACTCGTGCACGATGAT 579834 37 100.0 36 ..................................... GCGATCCGCCGAGCGTGGTGGTGCGACTGGATGCCG 579761 37 100.0 37 ..................................... GCCGTCGCCCATCCCGCCAGCTTCGCCACTCCGGCGT 579687 37 100.0 39 ..................................... GACGCCGAATGCCGGGCGCTTTTCCCCGGAACCGAAACC 579611 37 100.0 37 ..................................... GGCCTGCTCTACAGGGTCGTCCGGGTCCAAGTTCCGT 579537 37 100.0 37 ..................................... GGCGAGGCGACCGACGTCGAGATCGAGACCCACCGGC 579463 37 100.0 37 ..................................... CACGTCGCGTCGCACCAGGAGATCGCGGTCGTCTCGG 579389 37 100.0 37 ..................................... GCCGAGGTGACGCCGCCGCCGGAGCCGCCGCCGCCGC 579315 37 100.0 37 ..................................... ACGTGCACGATCGTCGTCGTCCGGGACATGTAGGCGA 579241 37 97.3 36 ...............G..................... CGCGACACGCTGGTGACGCTCGACCGGATGCGCGCC 579168 37 100.0 38 ..................................... GTGCCGATCGTCCGCACGAAGGCCCCCGGGTAGAGATC 579093 37 97.3 39 .........C........................... GCTTTCTCGGTGGTGATGCAGCCGGCCAGCATCAGGCAG 579017 37 100.0 44 ..................................... GCCACGTGGCACACCTGCACCTGCCCCGGTCCCGATCGTGTGCC 578936 37 100.0 36 ..................................... ACTTCCGCGCCGTCACGGGCGAGCTTGATGAACTCG 578863 37 100.0 39 ..................................... GAGGAGACCCACACCGACGAGGGCGGCCAGCCGCTGCGG 578787 37 100.0 37 ..................................... AGCCCGGCCCTGCGCGAATTCATCGCCGGCCGCACGC 578713 37 97.3 37 .........................A........... TGTTCGGCGACGTAGCTCAGCGCCTGGAAAGCCTCGA 578639 37 100.0 36 ..................................... CGCGTCCTGTCGGCGCCCGGGGCCTCGACCTACTAC 578566 36 97.3 36 .............-....................... ATGTTCTCCTGCCGGCGCTGGTTGAACGCACCGGAG 578494 37 100.0 36 ..................................... CAGTCACGCCCATCAGGTGCGAAATCAACGGAAACC 578421 37 100.0 39 ..................................... CGACAACGACGCCTCGGAAAGCGAGGTCGCACCGCACCA 578345 37 97.3 36 .................................C... ATATTTTCCCGGATTTCCGCGGCGTCGGCCCGCGTC 578272 37 100.0 37 ..................................... ACTTGATCGGCGGTAAGGTCTTGTGCGTCGCCCGTCG 578198 37 100.0 39 ..................................... GACCAGTCCTCGCGCGCGGCGTCGCAGAGGTCCGGCGAG 578122 37 97.3 38 .........................T........... GACTACGGCCGGGGCTACGCCGTCGGCGACTTCACCGA 578047 37 100.0 37 ..................................... GCGTACTCGCGGCCCGCGGCCTCGTCGAACGCCTTGT 577973 37 94.6 37 .C..............................C.... GTCGCGAAGCGCAGGCGGGTGACGCCTTCCGGCAGCA 577899 36 86.5 0 .C............G.........-....G.C..... | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 98.8 38 CTACTTCCCGGCCCAACGGCCGGGACCTCATTGAAGC # Left flank : CTGGCGGCGCGTCTTCAAGATCATGAAGGGCTACGGCCGCTGGCTGCAGCTCTCCGTCTTCCATTGCCGGCTCGACGGCGGCCGCCGCATCGAGATGGCCGCCGCCCTGGAAGCGTCGATCGACCACGGCAGCGACCACGTCCTCATCCTGGACCTCGGCCCGGCCGACGACGTCGACCTGCAGGTCGAGAGCCTCGGCAAGAGCTTCGCGCCAATCGTGCGCGAGGCGGTGGTGATCTGACGGTCGGCGAGGTCGGGCCGAAATCGGCGGCTGCACCCGCGACCACCGCCTCGCGCTGCGCTACACTCCCGCGAGCGGTCCGTCGCAACCCGAACCGGCGCCAGCGCTCGCACCCGGCCAAACCGTCGAGGTGGATCACGTTCTTTGATATCGTCCAGCTCTGTCGGGCCTCGTCGTACGAACCGGCGACGGCCCTGCCGGCGACCCCTCGCATCTGCACTCGCGAGCCCTTCGTCCCGCAGGGAAAATGCAAGGGGGC # Right flank : GTCTCGGCCGGGGCTGACGGCATGACGTCGCGGTCGAGCGGGATCGGGCCCCGGCCCGACGGCTCGAGACGTCCAGGCGACGGGGGGGCCGCGACGATCTGCGGCGGTTCGGTGGTCCGTGCGACCGTACGGGGGCCGAGGCGGGCGGCCGGAAGGGCCGTGTCGAACCGCCGTCGTCGCCGACCCGATCGTCGTTTTGCAGAGGGAGAGGGGTGGTACAGCTGGCTGGGCTTGAACCAGCGACCTTCGGAGCCACAATCCGCAATTTCGATCATATTATCAGATAGTTGAAAAAGCAGCCTGCGTCAAACCAGCTACTGACCATCAATGACTTACGGGCGATTTGTCAAACCCGCCGACGGATCGCACGGCAATTGCTCGGGCTTCCTCCAGACACTCGAGCACATCGAATCGACTATCACCAAGCATGCATTGGCAGCACTCATCCTCAAGGGGAAAATTTCACTCTTGCGTATATTGTCATTTAATCGCAAAGCAGA # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTTCCCGGCCCAACGGCCGGGACCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-18.30,-17.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 590309-589720 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXY01000007.1 Oharaeibacter diazotrophicus strain DSM 102969 Ga0244730_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 590308 37 97.3 31 .............................C....... TCTTCGCGGGTCAGGATCAGTGGGCATTCTA 590240 37 100.0 32 ..................................... GCTTCGAGGACCATCTCGCCCACTTCGGTGAT 590171 37 100.0 32 ..................................... TTGTTGCCGGCCGCCAGGATGTAGGTGGCCAT 590102 37 97.3 33 ..A.................................. GTCGAGGCTCTGCGCCGCGATGCCACTCTGGGG 590032 37 100.0 33 ..................................... TATCCGAACCTCTCCATGAGACTCTTGACCAGA 589962 37 94.6 32 ....................T......A......... ACGGGCATTCGTCAGATCGAAATGCATGATGT 589893 37 97.3 32 ...........T......................... GGCACCGGCGGCACATAGCCGGGCAGGGCCTC 589824 37 91.9 31 ...........T..G.T.................... GCCACGCCTTGGCGATACCGGGGAAGTCGAC 589756 37 91.9 0 ...........TA.....A.................. | ========== ====== ====== ====== ===================================== ================================= ================== 9 37 96.7 32 ATGCTCGTCCGGGTTCCGCTCGAACGCGGATTGAGAC # Left flank : GCCCTCACGCTCGCGGACGCGATGGATCTCGGCGATCGCCTGCGCCGTGCCCACGCGCCCTACATCGACATCCGGGAGAACCATCCCGATCGCGTGCCGTTGGCCATAGCGCCGCGGGAGGTGACCTACGTCGACGGCAACGGCGAGACGCTGCTGCGCTGGCGACCCGACACCGACCTCCGCGACCCCGACGGCAGCCGAGCACCGACAGGCGCGCGGGTGCCGCTGCGTCGCAAGCTGCGCGAGATGCCCGACGGCGAGCGCAAGGTACCGCCGTTCCGGCACTGGTCGTTCCTGCTCGGCGACGAGTCTTTCCGGCGCGGCGATGGCGGACGGCTGGCCTGGAAGATCGCGCCGGCGCGCGCACAGGGACTGACGTGGCGGCATTTCAGCGACGACAGGTTGCCGCTGCTCGCCACCATCGAGCTGGCCGATCCCGCGGACCATCATCTCGAACGCGGATTGAGACCGCCCTGTATAAAGGAGCCCCCTTGGCCATA # Right flank : CCCGTGGCGAGCGGAGCAGCCGTCTGCGCCACATTCCATGCTCGACCCAACTCCACGCGAACCTGAGAGACCGACCCTCGCCCCTTCGGCTCGTCGGCACTTCGCAAGACCTTTGCCGATGGAGTGCTTTCGAGGGATTCCGACGGCCGCGCCCCGGTCGGCTCGATCGGGCTCGGCTCTCCCGAGTTCCGCCGTAGGCGGAGAATCGGGCCGGCAGGCGCCGCGGCCGCCCCGTGCCGCGCACGGCCGCCGGAACGGGGCCGTCGGGTGGACGGCCTGCCCGCGTCGCGTCCGCGCCCGGCCGCCGCGGCGACATCACGGGCTCGGGACCGGCGTGACCGCGGACCACGGCTAGGCGGCGCACACAACTCCTGCTAACATCACGGACAATCGACACGCGAGCATATCGACCCATGGCTCAGCCGGCCCGACGCGCTCGGGCCGGGCGGGGGGGGGGGGTCGGACCTGGAACCGGACACGCCATCGATGGACGCGGACGA # Questionable array : NO Score: 2.69 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCGTCCGGGTTCCGCTCGAACGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA //