Array 1 942649-944263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067339.1 Salmonella enterica subsp. enterica strain Se32 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942649 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942710 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942771 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942832 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 942893 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 942954 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 943015 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 943076 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 943137 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 943198 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 943259 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943320 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 943381 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 943442 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943503 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943564 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943625 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 943686 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943748 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943809 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943870 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943931 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943992 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 944053 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 944114 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 944175 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 944236 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960396-961872 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP067339.1 Salmonella enterica subsp. enterica strain Se32 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960396 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960457 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 960519 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960580 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960641 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960702 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 960763 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960824 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 960885 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 960946 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 961007 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 961068 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 961129 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 961191 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 961294 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 961355 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 961416 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 961477 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 961538 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 961599 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 961660 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 961721 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 961782 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 961843 29 96.6 0 A............................ | A [961869] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //